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C3Z7P4

- C3Z7P4_BRAFL

UniProt

C3Z7P4 - C3Z7P4_BRAFL

Protein

DNA ligase

Gene

BRAFLDRAFT_69217

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:BRAFLDRAFT_69217Imported
    OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
    Taxonomic identifieri7739 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
    ProteomesiUP000001554: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi7739.JGI69217.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1793.
    KOiK10747.
    OMAiEMPNYDA.

    Family and domain databases

    Gene3Di1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C3Z7P4-1 [UniParc]FASTAAdd to Basket

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    MAQRSISSFF APRAKTPKQD TAATGHKSPL KTKNGSPPAF APGDDSPVKS    50
    LPRKKKARRI IDSDDDDEDE EENVAMEIEP SKSADEQKEA KDVEKTPKEV 100
    EKVKDESEDV PSPKMPRVTY NGPNLQSPGG IPKRKTARKQ LPTPKRKLVE 150
    IKSPKSNGHT SPTAEEEESS AKKVKTEKKE EKEEKTEEKM EEDSPDEEVK 200
    EKVKDEEEVV QQNKKKKSPK PKKEKQSPKS VDKKKKIKEE PGEKAKESAG 250
    PSEDSMDSLF AAVIRKAGEA TAEEEKEETE EKKEKSTEDL KSPSDKKAVK 300
    KEEDSSKKSS SGISSFFSPK RSSQPTDESS EKKPSPKPAA KPMAAFFKPK 350
    QEADKTVPYL ALAKTFEAIE EVRARLKITE ILCNFFRSVI ALTPDDLVQC 400
    VYLCLNKVGP AYEGLELGIG ETVLMKAIAE ATGRKMAQIK TDAQEKGDLG 450
    IVAEVMTKKI NFIKGMFVAC RQSEARYLIR SLGGKLRIGL AEQSVLTALA 500
    HAATLTPAGK DVLDAGKGKS SDALKKKLED AALILKTTYC EMPNYDAVIS 550
    AMLKHGLEEL PKHCKLTPGT PLKPMLAHPT KGVSEVLRRF EGAEFTCEYK 600
    YDGERAQIHM LENGEIHIYS RNQENNTSKY PDIIERMPKV NHDDVTSCII 650
    DSEAVAWDPE NKKILPFQVL STRKRKDADQ SEIKVQVCVY AFDLLYLNGQ 700
    SLVREPFRKR REMLRESFNE VEGEFVFATS MVSGNTEEIA VFLDASIKDS 750
    CEGLMVKTLD KDATYEIAKR SHNWLKLKKD YLDGVGDTLD VVPIGGFLGT 800
    GKRTGKYGGF LLACYSEEDE EFQSICKIGT GFKDEELEQH TEFFKNHVVD 850
    KPKSYYRYDS SVEPDHWFDA VQVWEIKCAD LSISPVHKAA EGIVDPEKGI 900
    SLRFPRFLRI RDDKKPEEAT SAQQVAEMYR NQDQVKNQQS NEKSEPADDD 950
    FY 952
    Length:952
    Mass (Da):106,658
    Last modified:July 28, 2009 - v1
    Checksum:iF0778CE028E3CAF7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG666591 Genomic DNA. Translation: EEN51399.1.
    RefSeqiXP_002595387.1. XM_002595341.1.
    UniGeneiBfl.7211.

    Genome annotation databases

    GeneIDi7228935.
    KEGGibfo:BRAFLDRAFT_69217.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG666591 Genomic DNA. Translation: EEN51399.1 .
    RefSeqi XP_002595387.1. XM_002595341.1.
    UniGenei Bfl.7211.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7739.JGI69217.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 7228935.
    KEGGi bfo:BRAFLDRAFT_69217.

    Phylogenomic databases

    eggNOGi COG1793.
    KOi K10747.
    OMAi EMPNYDA.

    Family and domain databases

    Gene3Di 1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S238N-H82Imported.
      Tissue: TestesImported.

    Entry informationi

    Entry nameiC3Z7P4_BRAFL
    AccessioniPrimary (citable) accession number: C3Z7P4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3