SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C3Z7P4

- C3Z7P4_BRAFL

UniProt

C3Z7P4 - C3Z7P4_BRAFL

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
DNA ligase
Gene
BRAFLDRAFT_69217
Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:BRAFLDRAFT_69217Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI69217.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1793.
KOiK10747.
OMAiEMPNYDA.

Family and domain databases

Gene3Di1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3Z7P4-1 [UniParc]FASTAAdd to Basket

« Hide

MAQRSISSFF APRAKTPKQD TAATGHKSPL KTKNGSPPAF APGDDSPVKS    50
LPRKKKARRI IDSDDDDEDE EENVAMEIEP SKSADEQKEA KDVEKTPKEV 100
EKVKDESEDV PSPKMPRVTY NGPNLQSPGG IPKRKTARKQ LPTPKRKLVE 150
IKSPKSNGHT SPTAEEEESS AKKVKTEKKE EKEEKTEEKM EEDSPDEEVK 200
EKVKDEEEVV QQNKKKKSPK PKKEKQSPKS VDKKKKIKEE PGEKAKESAG 250
PSEDSMDSLF AAVIRKAGEA TAEEEKEETE EKKEKSTEDL KSPSDKKAVK 300
KEEDSSKKSS SGISSFFSPK RSSQPTDESS EKKPSPKPAA KPMAAFFKPK 350
QEADKTVPYL ALAKTFEAIE EVRARLKITE ILCNFFRSVI ALTPDDLVQC 400
VYLCLNKVGP AYEGLELGIG ETVLMKAIAE ATGRKMAQIK TDAQEKGDLG 450
IVAEVMTKKI NFIKGMFVAC RQSEARYLIR SLGGKLRIGL AEQSVLTALA 500
HAATLTPAGK DVLDAGKGKS SDALKKKLED AALILKTTYC EMPNYDAVIS 550
AMLKHGLEEL PKHCKLTPGT PLKPMLAHPT KGVSEVLRRF EGAEFTCEYK 600
YDGERAQIHM LENGEIHIYS RNQENNTSKY PDIIERMPKV NHDDVTSCII 650
DSEAVAWDPE NKKILPFQVL STRKRKDADQ SEIKVQVCVY AFDLLYLNGQ 700
SLVREPFRKR REMLRESFNE VEGEFVFATS MVSGNTEEIA VFLDASIKDS 750
CEGLMVKTLD KDATYEIAKR SHNWLKLKKD YLDGVGDTLD VVPIGGFLGT 800
GKRTGKYGGF LLACYSEEDE EFQSICKIGT GFKDEELEQH TEFFKNHVVD 850
KPKSYYRYDS SVEPDHWFDA VQVWEIKCAD LSISPVHKAA EGIVDPEKGI 900
SLRFPRFLRI RDDKKPEEAT SAQQVAEMYR NQDQVKNQQS NEKSEPADDD 950
FY 952
Length:952
Mass (Da):106,658
Last modified:July 28, 2009 - v1
Checksum:iF0778CE028E3CAF7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666591 Genomic DNA. Translation: EEN51399.1.
RefSeqiXP_002595387.1. XM_002595341.1.
UniGeneiBfl.7211.

Genome annotation databases

GeneIDi7228935.
KEGGibfo:BRAFLDRAFT_69217.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666591 Genomic DNA. Translation: EEN51399.1 .
RefSeqi XP_002595387.1. XM_002595341.1.
UniGenei Bfl.7211.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7739.JGI69217.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7228935.
KEGGi bfo:BRAFLDRAFT_69217.

Phylogenomic databases

eggNOGi COG1793.
KOi K10747.
OMAi EMPNYDA.

Family and domain databases

Gene3Di 1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3Z7P4_BRAFL
AccessioniPrimary (citable) accession number: C3Z7P4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: March 19, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3