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C3YZ80

- C3YZ80_BRAFL

UniProt

C3YZ80 - C3YZ80_BRAFL

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Protein
Submitted name: Putative uncharacterized protein
Gene
BRAFLDRAFT_82922
Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
  2. damaged DNA binding Source: InterPro
  3. hydrolase activity, hydrolyzing N-glycosyl compounds Source: InterPro
  4. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:BRAFLDRAFT_82922Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI82922.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotations

Phylogenomic databases

eggNOGiCOG0266.
KOiK10569.

Family and domain databases

InterProiIPR013057. AA_transpt_TM.
IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01490. Aa_trans. 2 hits.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 2 hits.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 2 hits.
PS50199. ZF_RANBP2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

C3YZ80-1 [UniParc]FASTAAdd to Basket

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MVEGPGCKLK GERLVRLKGQ RVVQTQWGRN RTRPEGAAKG SGAEQKDTTS    50
EKSDHLVGLP LSNVETLGKE LFVYFGDFCL RVHFGMNGSV QIKGHRNKAF 100
QKTSEPVLTL TLTVDSVSFH DCTVQIRSSS DCHDKYLQFQ SLDICSTHFS 150
LSQATRTVSC HGDRMLCDVL LDQSVLPGVG NIIKNEVLQL KEEHVKHLVK 200
MTRDFSMLFY KCRKEGRALS RHCKVYKRQW CGQCQGRITV CRMGENGRMT 250
YFCEGCQTRD PETIINNRRI LPTKNSLIGW VTTGGHSRAD DQEWTCSVCT 300
LINKGKAGMC SACGSPKPLS STGRLSDTEW TCSLCTLVND GDTKVCLVCE 350
GPRSEPENSR EQLQRVIATS DGDSVHSSLP SVPDGTPSPC NGQVSRKREL 400
PCSSGVIVTK PTIPASGKLA RLESAPLTSP SGTRVPSAAI GFNSDAAGNR 450
LERPQHEITF HSNGSKVARG TEGSNTVMCC KQHNKWADDN FPLCNHGKRC 500
VKRTVLKQGV NNGKNFYTCR LERGKQCPFF QHCALRKQFN IVVDGKKLRT 550
EEPDIEKMSV GGGGGDGEGT RHPLKIFANI FISFIGAGVL GVPYAFKEAG 600
IIEGMVIMSA VGVLSVKAML MIIDSKYKIN RDKRPKRTDD KEFAADIEME 650
VLLDGDSAHG ENNGDLKTGG KQHRRQSSFD HHLEELDYGD VGFCCSYIIF 700
ISQNLMHYVD NSHILFADFA NVFAYGVVFW FDFEHVSKVR IFIFTMFVVT 750
TLYLVFGVCG YLSFGPETNS IITLNLPPGV FPLLVKGCLC FSLFFTYPVM 800
MFPVVQILEK KWFRDPLKQT FLGNTLRACL VLTTGMVVLL IPSFSTIMSL 850
LGSTCCALLA FILPGLFHMR IHRESISKCH YALDVFFIVL GVVG 894
Length:894
Mass (Da):99,118
Last modified:July 28, 2009 - v1
Checksum:iB17D959C0E9CA6F2
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei894 – 8941Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666566 Genomic DNA. Translation: EEN54151.1.
RefSeqiXP_002598139.1. XM_002598093.1.

Genome annotation databases

GeneIDi7231589.
KEGGibfo:BRAFLDRAFT_82922.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666566 Genomic DNA. Translation: EEN54151.1 .
RefSeqi XP_002598139.1. XM_002598093.1.

3D structure databases

ModBasei Search...

Protein-protein interaction databases

STRINGi 7739.JGI82922.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7231589.
KEGGi bfo:BRAFLDRAFT_82922.

Phylogenomic databases

eggNOGi COG0266.
KOi K10569.

Family and domain databases

InterProi IPR013057. AA_transpt_TM.
IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF01490. Aa_trans. 2 hits.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view ]
SMARTi SM00547. ZnF_RBZ. 2 hits.
[Graphical view ]
SUPFAMi SSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEi PS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 2 hits.
PS50199. ZF_RANBP2_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3YZ80_BRAFL
AccessioniPrimary (citable) accession number: C3YZ80
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: March 19, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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