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Protein
Submitted name:

Putative uncharacterized protein

Gene

BRAFLDRAFT_82922

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro
  2. DNA-(apurinic or apyrimidinic site) lyase activity Source: InterPro
  3. hydrolase activity, hydrolyzing N-glycosyl compounds Source: InterPro
  4. zinc ion binding Source: InterPro

GO - Biological processi

  1. base-excision repair Source: InterPro
  2. nucleotide-excision repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:BRAFLDRAFT_82922Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554 Componenti: Partially assembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI82922.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

eggNOGiCOG0266.
InParanoidiC3YZ80.
KOiK10569.

Family and domain databases

InterProiIPR013057. AA_transpt_TM.
IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01490. Aa_trans. 2 hits.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 2 hits.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 2 hits.
PS50199. ZF_RANBP2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

C3YZ80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEGPGCKLK GERLVRLKGQ RVVQTQWGRN RTRPEGAAKG SGAEQKDTTS
60 70 80 90 100
EKSDHLVGLP LSNVETLGKE LFVYFGDFCL RVHFGMNGSV QIKGHRNKAF
110 120 130 140 150
QKTSEPVLTL TLTVDSVSFH DCTVQIRSSS DCHDKYLQFQ SLDICSTHFS
160 170 180 190 200
LSQATRTVSC HGDRMLCDVL LDQSVLPGVG NIIKNEVLQL KEEHVKHLVK
210 220 230 240 250
MTRDFSMLFY KCRKEGRALS RHCKVYKRQW CGQCQGRITV CRMGENGRMT
260 270 280 290 300
YFCEGCQTRD PETIINNRRI LPTKNSLIGW VTTGGHSRAD DQEWTCSVCT
310 320 330 340 350
LINKGKAGMC SACGSPKPLS STGRLSDTEW TCSLCTLVND GDTKVCLVCE
360 370 380 390 400
GPRSEPENSR EQLQRVIATS DGDSVHSSLP SVPDGTPSPC NGQVSRKREL
410 420 430 440 450
PCSSGVIVTK PTIPASGKLA RLESAPLTSP SGTRVPSAAI GFNSDAAGNR
460 470 480 490 500
LERPQHEITF HSNGSKVARG TEGSNTVMCC KQHNKWADDN FPLCNHGKRC
510 520 530 540 550
VKRTVLKQGV NNGKNFYTCR LERGKQCPFF QHCALRKQFN IVVDGKKLRT
560 570 580 590 600
EEPDIEKMSV GGGGGDGEGT RHPLKIFANI FISFIGAGVL GVPYAFKEAG
610 620 630 640 650
IIEGMVIMSA VGVLSVKAML MIIDSKYKIN RDKRPKRTDD KEFAADIEME
660 670 680 690 700
VLLDGDSAHG ENNGDLKTGG KQHRRQSSFD HHLEELDYGD VGFCCSYIIF
710 720 730 740 750
ISQNLMHYVD NSHILFADFA NVFAYGVVFW FDFEHVSKVR IFIFTMFVVT
760 770 780 790 800
TLYLVFGVCG YLSFGPETNS IITLNLPPGV FPLLVKGCLC FSLFFTYPVM
810 820 830 840 850
MFPVVQILEK KWFRDPLKQT FLGNTLRACL VLTTGMVVLL IPSFSTIMSL
860 870 880 890
LGSTCCALLA FILPGLFHMR IHRESISKCH YALDVFFIVL GVVG
Length:894
Mass (Da):99,118
Last modified:July 27, 2009 - v1
Checksum:iB17D959C0E9CA6F2
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei894 – 8941Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666566 Genomic DNA. Translation: EEN54151.1.
RefSeqiXP_002598139.1. XM_002598093.1.

Genome annotation databases

GeneIDi7231589.
KEGGibfo:BRAFLDRAFT_82922.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666566 Genomic DNA. Translation: EEN54151.1.
RefSeqiXP_002598139.1. XM_002598093.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7739.JGI82922.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi7231589.
KEGGibfo:BRAFLDRAFT_82922.

Phylogenomic databases

eggNOGiCOG0266.
InParanoidiC3YZ80.
KOiK10569.

Family and domain databases

InterProiIPR013057. AA_transpt_TM.
IPR015886. DNA_glyclase/AP_lyase_DNA-bd.
IPR012319. DNA_glycosylase/AP_lyase_cat.
IPR010979. Ribosomal_S13-like_H2TH.
IPR000214. Znf_DNA_glyclase/AP_lyase.
IPR010666. Znf_GRF.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF01490. Aa_trans. 2 hits.
PF06831. H2TH. 1 hit.
PF06839. zf-GRF. 1 hit.
PF00641. zf-RanBP. 2 hits.
[Graphical view]
SMARTiSM00547. ZnF_RBZ. 2 hits.
[Graphical view]
SUPFAMiSSF46946. SSF46946. 1 hit.
SSF81624. SSF81624. 1 hit.
PROSITEiPS51066. ZF_FPG_2. 1 hit.
PS01358. ZF_RANBP2_1. 2 hits.
PS50199. ZF_RANBP2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3YZ80_BRAFL
AccessioniPrimary (citable) accession number: C3YZ80
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2009
Last sequence update: July 27, 2009
Last modified: January 6, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.