C3YZ80 (C3YZ80_BRAFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN54151.1

Gene names

ORF Names:

BRAFLDRAFT_82922 EMBL EEN54151.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus) [Reference proteome]

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	894 AA.
Sequence status	Fragment.
Protein existence	Predicted

Ontologies

Keywords
Cellular component	Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS013057
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro nucleotide-excision repair Inferred from electronic annotation. Source: InterPro
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: InterPro damaged DNA binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing N-glycosyl compounds Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	894	1	EMBL EEN54151.1

Sequences

	Sequence		Length	Mass (Da)
	C3YZ80 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: B17D959C0E9CA6F2	FASTA	894	99,118
	10 20 30 40 50 60 MVEGPGCKLK GERLVRLKGQ RVVQTQWGRN RTRPEGAAKG SGAEQKDTTS EKSDHLVGLP 70 80 90 100 110 120 LSNVETLGKE LFVYFGDFCL RVHFGMNGSV QIKGHRNKAF QKTSEPVLTL TLTVDSVSFH 130 140 150 160 170 180 DCTVQIRSSS DCHDKYLQFQ SLDICSTHFS LSQATRTVSC HGDRMLCDVL LDQSVLPGVG 190 200 210 220 230 240 NIIKNEVLQL KEEHVKHLVK MTRDFSMLFY KCRKEGRALS RHCKVYKRQW CGQCQGRITV 250 260 270 280 290 300 CRMGENGRMT YFCEGCQTRD PETIINNRRI LPTKNSLIGW VTTGGHSRAD DQEWTCSVCT 310 320 330 340 350 360 LINKGKAGMC SACGSPKPLS STGRLSDTEW TCSLCTLVND GDTKVCLVCE GPRSEPENSR 370 380 390 400 410 420 EQLQRVIATS DGDSVHSSLP SVPDGTPSPC NGQVSRKREL PCSSGVIVTK PTIPASGKLA 430 440 450 460 470 480 RLESAPLTSP SGTRVPSAAI GFNSDAAGNR LERPQHEITF HSNGSKVARG TEGSNTVMCC 490 500 510 520 530 540 KQHNKWADDN FPLCNHGKRC VKRTVLKQGV NNGKNFYTCR LERGKQCPFF QHCALRKQFN 550 560 570 580 590 600 IVVDGKKLRT EEPDIEKMSV GGGGGDGEGT RHPLKIFANI FISFIGAGVL GVPYAFKEAG 610 620 630 640 650 660 IIEGMVIMSA VGVLSVKAML MIIDSKYKIN RDKRPKRTDD KEFAADIEME VLLDGDSAHG 670 680 690 700 710 720 ENNGDLKTGG KQHRRQSSFD HHLEELDYGD VGFCCSYIIF ISQNLMHYVD NSHILFADFA 730 740 750 760 770 780 NVFAYGVVFW FDFEHVSKVR IFIFTMFVVT TLYLVFGVCG YLSFGPETNS IITLNLPPGV 790 800 810 820 830 840 FPLLVKGCLC FSLFFTYPVM MFPVVQILEK KWFRDPLKQT FLGNTLRACL VLTTGMVVLL 850 860 870 880 890 IPSFSTIMSL LGSTCCALLA FILPGLFHMR IHRESISKCH YALDVFFIVL GVVG

References

[1]

"The amphioxus genome and the evolution of the chordate karyotype." US DOE Joint Genome Institute (JGI-PGF) Putnam N.H., Butts T., Ferrier D.E., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J. , Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W., Satoh N., Rokhsar D.S. Nature 453:1064-1071(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 EMBL EEN54151.1. Tissue: Testes EMBL EEN54151.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666566 Genomic DNA. Translation: EEN54151.1.
RefSeq	XP_002598139.1. XM_002598093.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7231589.
KEGG	bfo:BRAFLDRAFT_82922.
Phylogenomic databases
eggNOG	COG0266.
KO	K10569.
Family and domain databases
InterPro	IPR013057. AA_transpt_TM. IPR015886. DNA_glyclase/AP_lyase_DNA-bd. IPR012319. DNA_glycosylase/AP_lyase_cat. IPR010979. Ribosomal_S13-like_H2TH. IPR000214. Znf_DNA_glyclase/AP_lyase. IPR010666. Znf_GRF. IPR001876. Znf_RanBP2. [Graphical view]
Pfam	PF01490. Aa_trans. 2 hits. PF06831. H2TH. 1 hit. PF06839. zf-GRF. 1 hit. PF00641. zf-RanBP. 2 hits. [Graphical view]
SMART	SM00547. ZnF_RBZ. 2 hits. [Graphical view]
SUPFAM	SSF81624. Form_DNAglyc_cat. 1 hit. SSF46946. Ribosomal_H2TH. 1 hit.
PROSITE	PS51066. ZF_FPG_2. 1 hit. PS01358. ZF_RANBP2_1. 2 hits. PS50199. ZF_RANBP2_2. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3YZ80_BRAFL

Accession

Primary (citable) accession number: C3YZ80

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	February 6, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)