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C3YZ01

- C3YZ01_BRAFL

UniProt

C3YZ01 - C3YZ01_BRAFL

Protein

DNA ligase

Gene

BRAFLDRAFT_118305

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (28 Jul 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:BRAFLDRAFT_118305Imported
    OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
    Taxonomic identifieri7739 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
    ProteomesiUP000001554: Partially assembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi7739.JGI118305.

    Structurei

    3D structure databases

    ProteinModelPortaliC3YZ01.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    eggNOGiNOG148750.
    KOiK10777.
    OMAiISHFLCA.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C3YZ01-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAVAATVPFS HLSIRSLVET TKLMCNLICL TGELAVRAAW KHGEDSFYPA    50
    MRLILPQCER ERIAYGIKEF TLAKYYIEIL GLAKDSSDAL KLLKYRAPSH 100
    AKGEAGDFAA VAYFVLKNRC PEKGSLTIQE VNDLLDSIAT NNAAKNKEEV 150
    RRSILKLLRS TSAMEQELKM GMNQAGVFAV FHPDAEDLFN VTNSLAKVCT 200
    DLFDPHVRLN EIAISLFSPF KPMLGQRIPL DGVEKEMHHE MFYIETKFDG 250
    ERMLLHKNGD TYKYFSRSGK DYTHQFGAHP LEGSLTPYIH NCFASHVKSC 300
    ILDGEMVGYN PQTKSIMSKG DKFDIKNMAE DSDLQTMYCV FDILLLNGQK 350
    FANSPLRERV DYLDKLFTPI EGRLFLGDRK EARTKAEVID ALNEAIDRRE 400
    EGLVIKYPGS KYAPDKRKGS GWLKVKPEYV DGLMDQVDVV IVGGYFGKGR 450
    RSHMISHFLC AVAVQSNTPG DKPALFHTFC RVGSGYTLKE LYQMGQRLHP 500
    HWRVFDKKKP PKTNIMFPSG YKEAPDVWID PEQSLIVQIK AAEIIESDKF 550
    KTGCTLRFPR LEKVRDDKEW FDCMTLEELD DMRKVSTIFE DREFCIINGP 600
    LEHGKADLER KVVAYGGTVV QAPGPDTSCV LAHKVNVRVN NIISGGKYDV 650
    VKADWLLRCW EAKQCLPWLP SHMIHMSPDT AAQFALEFDR HGCMLTTVML 700
    LETSQQIKDC PLDLVALEAR FHGATVSPIL DSDVTHVLFH TSDLSRLDEV 750
    KALRRQRTKK HHLVTPAWVS ECIQAGAMLT ERDYEPYSTT AST 793
    Length:793
    Mass (Da):89,706
    Last modified:July 28, 2009 - v1
    Checksum:i97E31284FC115917
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG666565 Genomic DNA. Translation: EEN54509.1.
    RefSeqiXP_002598497.1. XM_002598451.1.

    Genome annotation databases

    GeneIDi7219915.
    KEGGibfo:BRAFLDRAFT_118305.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG666565 Genomic DNA. Translation: EEN54509.1 .
    RefSeqi XP_002598497.1. XM_002598451.1.

    3D structure databases

    ProteinModelPortali C3YZ01.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7739.JGI118305.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 7219915.
    KEGGi bfo:BRAFLDRAFT_118305.

    Phylogenomic databases

    eggNOGi NOG148750.
    KOi K10777.
    OMAi ISHFLCA.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S238N-H82Imported.
      Tissue: TestesImported.

    Entry informationi

    Entry nameiC3YZ01_BRAFL
    AccessioniPrimary (citable) accession number: C3YZ01
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 28, 2009
    Last sequence update: July 28, 2009
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3