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C3YZ01

- C3YZ01_BRAFL

UniProt

C3YZ01 - C3YZ01_BRAFL

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Protein

DNA ligase

Gene

BRAFLDRAFT_118305

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:BRAFLDRAFT_118305Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI118305.

Structurei

3D structure databases

ProteinModelPortaliC3YZ01.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiNOG148750.
InParanoidiC3YZ01.
KOiK10777.
OMAiISHFLCA.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3YZ01-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAVAATVPFS HLSIRSLVET TKLMCNLICL TGELAVRAAW KHGEDSFYPA
60 70 80 90 100
MRLILPQCER ERIAYGIKEF TLAKYYIEIL GLAKDSSDAL KLLKYRAPSH
110 120 130 140 150
AKGEAGDFAA VAYFVLKNRC PEKGSLTIQE VNDLLDSIAT NNAAKNKEEV
160 170 180 190 200
RRSILKLLRS TSAMEQELKM GMNQAGVFAV FHPDAEDLFN VTNSLAKVCT
210 220 230 240 250
DLFDPHVRLN EIAISLFSPF KPMLGQRIPL DGVEKEMHHE MFYIETKFDG
260 270 280 290 300
ERMLLHKNGD TYKYFSRSGK DYTHQFGAHP LEGSLTPYIH NCFASHVKSC
310 320 330 340 350
ILDGEMVGYN PQTKSIMSKG DKFDIKNMAE DSDLQTMYCV FDILLLNGQK
360 370 380 390 400
FANSPLRERV DYLDKLFTPI EGRLFLGDRK EARTKAEVID ALNEAIDRRE
410 420 430 440 450
EGLVIKYPGS KYAPDKRKGS GWLKVKPEYV DGLMDQVDVV IVGGYFGKGR
460 470 480 490 500
RSHMISHFLC AVAVQSNTPG DKPALFHTFC RVGSGYTLKE LYQMGQRLHP
510 520 530 540 550
HWRVFDKKKP PKTNIMFPSG YKEAPDVWID PEQSLIVQIK AAEIIESDKF
560 570 580 590 600
KTGCTLRFPR LEKVRDDKEW FDCMTLEELD DMRKVSTIFE DREFCIINGP
610 620 630 640 650
LEHGKADLER KVVAYGGTVV QAPGPDTSCV LAHKVNVRVN NIISGGKYDV
660 670 680 690 700
VKADWLLRCW EAKQCLPWLP SHMIHMSPDT AAQFALEFDR HGCMLTTVML
710 720 730 740 750
LETSQQIKDC PLDLVALEAR FHGATVSPIL DSDVTHVLFH TSDLSRLDEV
760 770 780 790
KALRRQRTKK HHLVTPAWVS ECIQAGAMLT ERDYEPYSTT AST
Length:793
Mass (Da):89,706
Last modified:July 28, 2009 - v1
Checksum:i97E31284FC115917
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666565 Genomic DNA. Translation: EEN54509.1.
RefSeqiXP_002598497.1. XM_002598451.1.

Genome annotation databases

GeneIDi7219915.
KEGGibfo:BRAFLDRAFT_118305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666565 Genomic DNA. Translation: EEN54509.1 .
RefSeqi XP_002598497.1. XM_002598451.1.

3D structure databases

ProteinModelPortali C3YZ01.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7739.JGI118305.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7219915.
KEGGi bfo:BRAFLDRAFT_118305.

Phylogenomic databases

eggNOGi NOG148750.
InParanoidi C3YZ01.
KOi K10777.
OMAi ISHFLCA.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
PANTHERi PTHR10459:SF7. PTHR10459:SF7. 1 hit.
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3YZ01_BRAFL
AccessioniPrimary (citable) accession number: C3YZ01
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3