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C3YZ01 (C3YZ01_BRAFL) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:BRAFLDRAFT_118305 EMBL EEN54509.1
OrganismBranchiostoma floridae (Florida lancelet) (Amphioxus) [Reference proteome]
Taxonomic identifier7739 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma

Protein attributes

Sequence length793 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
C3YZ01 [UniParc].

Last modified July 28, 2009. Version 1.
Checksum: 97E31284FC115917

FASTA79389,706
        10         20         30         40         50         60 
MAVAATVPFS HLSIRSLVET TKLMCNLICL TGELAVRAAW KHGEDSFYPA MRLILPQCER 

        70         80         90        100        110        120 
ERIAYGIKEF TLAKYYIEIL GLAKDSSDAL KLLKYRAPSH AKGEAGDFAA VAYFVLKNRC 

       130        140        150        160        170        180 
PEKGSLTIQE VNDLLDSIAT NNAAKNKEEV RRSILKLLRS TSAMEQELKM GMNQAGVFAV 

       190        200        210        220        230        240 
FHPDAEDLFN VTNSLAKVCT DLFDPHVRLN EIAISLFSPF KPMLGQRIPL DGVEKEMHHE 

       250        260        270        280        290        300 
MFYIETKFDG ERMLLHKNGD TYKYFSRSGK DYTHQFGAHP LEGSLTPYIH NCFASHVKSC 

       310        320        330        340        350        360 
ILDGEMVGYN PQTKSIMSKG DKFDIKNMAE DSDLQTMYCV FDILLLNGQK FANSPLRERV 

       370        380        390        400        410        420 
DYLDKLFTPI EGRLFLGDRK EARTKAEVID ALNEAIDRRE EGLVIKYPGS KYAPDKRKGS 

       430        440        450        460        470        480 
GWLKVKPEYV DGLMDQVDVV IVGGYFGKGR RSHMISHFLC AVAVQSNTPG DKPALFHTFC 

       490        500        510        520        530        540 
RVGSGYTLKE LYQMGQRLHP HWRVFDKKKP PKTNIMFPSG YKEAPDVWID PEQSLIVQIK 

       550        560        570        580        590        600 
AAEIIESDKF KTGCTLRFPR LEKVRDDKEW FDCMTLEELD DMRKVSTIFE DREFCIINGP 

       610        620        630        640        650        660 
LEHGKADLER KVVAYGGTVV QAPGPDTSCV LAHKVNVRVN NIISGGKYDV VKADWLLRCW 

       670        680        690        700        710        720 
EAKQCLPWLP SHMIHMSPDT AAQFALEFDR HGCMLTTVML LETSQQIKDC PLDLVALEAR 

       730        740        750        760        770        780 
FHGATVSPIL DSDVTHVLFH TSDLSRLDEV KALRRQRTKK HHLVTPAWVS ECIQAGAMLT 

       790 
ERDYEPYSTT AST 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
GG666565 Genomic DNA. Translation: EEN54509.1.
RefSeqXP_002598497.1. XM_002598451.1.

3D structure databases

ProteinModelPortalC3YZ01.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7739.JGI118305.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7219915.
KEGGbfo:BRAFLDRAFT_118305.

Phylogenomic databases

eggNOGNOG148750.
KOK10777.
OMAISHFLCA.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3YZ01_BRAFL
AccessionPrimary (citable) accession number: C3YZ01
Entry history
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: March 19, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)