C3YTL2 (C3YTL2_BRAFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN56139.1

Gene names

ORF Names:

BRAFLDRAFT_204226 EMBL EEN56139.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus)

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	519 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	tRNA aminoacylation for protein translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro aminoacyl-tRNA ligase activity Inferred from electronic annotation. Source: InterPro nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL EEN56139.1
	Non-terminal residue	519	1	EMBL EEN56139.1

Sequences

	Sequence		Length	Mass (Da)
	C3YTL2 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: AF94721FEAE85D89	FASTA	519	59,004
	10 20 30 40 50 60 DVSSYSLRSH TCGELRAVHA GEDVTLCGWV QFQRKQLFVT LRDSYGVIQL VLPQDKKHAD 70 80 90 100 110 120 MKQTLAHLPP ESVVCVQGIV QLRPIGEANK AMSTGDVEVA VSKVEMVNKS KSLPFQIRDF 130 140 150 160 170 180 FQVNEHLRLK HRYLDLRGSQ LQHNLRLRSQ VIMKMREVNK HLSSQFRFVD VETPTLFRRT 190 200 210 220 230 240 PGGAREFVVP SREKGKFFCL PQSPQQFKQL LMVGGVDRYF QIAKCYRDED LRQDRQPEFT 250 260 270 280 290 300 QVDIEMSFVD QRGVEQLIEE LLQHAWPDGK GALTLPFPRM QYKDAMKKYG SDKPDTRFGM 310 320 330 340 350 360 KLNDVSDIMR SSGVTVFERL LKDNSGNTIQ AINAKQAAPH MKNKDIEKLQ DLAKQMMSKG 370 380 390 400 410 420 LSILQILPGG EMKGAMAKHI SSPCRNALLQ ELQAEEGDML LLAGGEHLKT CELLGRIRVE 430 440 450 460 470 480 CADILETQGV QLRDPDVFNF LWITDFPLFV PKEDGSGLES AHHPFTAPHP DDLDLVYSHP 490 500 510 HKVRSQHYDL VLNGNEIAGG SIRIHDAEVQ RYILEEVLK

References

[1]

"The amphioxus genome and the evolution of the chordate karyotype." US DOE Joint Genome Institute (JGI-PGF) Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J. , Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H., Satoh N., Rokhsar D.S. Nature 453:1064-1071(2008) [PubMed: 18563158] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 EMBL EEN56139.1. Tissue: Testes EMBL EEN56139.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666552 Genomic DNA. Translation: EEN56139.1.
RefSeq	XP_002600127.1. XM_002600081.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C3YTL2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7222158.
KEGG	bfo:BRAFLDRAFT_204226.
Phylogenomic databases
OMA	AFPKTQQ.
PhylomeDB	C3YTL2.
Family and domain databases
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004524. Asp-tRNA-synth_IIb_bac/mt. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR004115. GAD_dom. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Gene3D	G3DSA:3.30.1360.30. GAD_dom. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K01876.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF5. AspS_bac. 1 hit.
Pfam	PF02938. GAD. 1 hit. PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
PRINTS	PR01042. TRNASYNTHASP.
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF55261. SSF55261. 1 hit.
TIGRFAMs	TIGR00459. AspS_bact. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3YTL2_BRAFL

Accession

Primary (citable) accession number: C3YTL2

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)