Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

General transcription factor IIH subunit 4

Gene

BRAFLDRAFT_57175

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
General transcription factor IIH subunit 4UniRule annotation
Gene namesi
ORF Names:BRAFLDRAFT_57175Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
Proteomesi
  • UP000001554 Componenti: Partially assembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI57175.

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3471. Eukaryota.
COG5144. LUCA.
InParanoidiC3YTK8.
KOiK03144.
OMAiYLEQYAH.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

C3YTK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAGTKKLD CKDLHGYLKT LGSSLLDELY GRPATCLAVF RELTDLAKHY
60 70 80 90 100
VMRLLFLEQA VPQAVVGSWV TSGNHSEHLR AVSQLSELRV WHEHQISGGL
110 120 130 140 150
AGWILSPTFR ANLRTALLGG GKPWFSVVQL PPDKHAKDVA ALDTYSLERW
160 170 180 190 200
EVLLNFIVGS GEAQVSKDIM EILIKSGLMK SEEGSLHPTI TPAGFQFLLM
210 220 230 240 250
DTPSQVWYII LQYLDTMQSR GLNLVEALQF LFQISFSTLG KDYPTEGMSD
260 270 280 290 300
SMQQFLQHLR ELGLVNQRKR KSGRFYPTRL AIHLASGISD VEKDFHKEGY
310 320 330 340 350
LVVESNYRIY AYTDSELQVA LIGLFSEILY RFPNMVVANL TRDSVQEAVV
360 370 380 390 400
RGITADQILH FLRVNAHPKA LHRVPIVPPT ISDQIRLWEM ERDRLTFTEG
410 420 430 440 450
VLYNQFLSQP DFEMLRNYAK DLGVLLWENN PKRLMVVSKA GHDDVKRYWK

TIRKGNS
Length:457
Mass (Da):51,906
Last modified:July 28, 2009 - v1
Checksum:iFFC559F1029EBDC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666552 Genomic DNA. Translation: EEN56135.1.
RefSeqiXP_002600123.1. XM_002600077.1.

Genome annotation databases

GeneIDi7219886.
KEGGibfo:BRAFLDRAFT_57175.

Similar proteinsi

Entry informationi

Entry nameiC3YTK8_BRAFL
AccessioniPrimary (citable) accession number: C3YTK8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: June 7, 2017
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported