C3YTD9 (C3YTD9_BRAFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN56506.1

Gene names

ORF Names:

BRAFLDRAFT_276703 EMBL EEN56506.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus)

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	363 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro
Molecular function	RNA-3'-phosphate cyclase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3YTD9 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: F28C6FC9C0844E5E	FASTA	363	38,428
	10 20 30 40 50 60 MTAAAAKNVI LIDGSYLEGG GQILRNATAL SCLLSQPIRV NNIRAGRSTP GLRPQHLSGI 70 80 90 100 110 120 ELVRDLCGGR LEGGKVSSTE IFFTPGEIQG GNFLADTHTA GSICLLMQVS IPCLLFSPGP 130 140 150 160 170 180 AQLTLKGGTN AEFAPQIDYT TMVFGPIAER MGVKYTCDIK RRGYYPKGGG EVRITTSPVA 190 200 210 220 230 240 MVSPIDLMDR GQVTKVTGRA WVAGSLPVKL AHLASKAATA LIKREFPDVP VDIEAVQEPR 250 260 270 280 290 300 HAAFGNGNGI VIMAETSTGC RLGGSALGKR GVQAEDVGRE AAQMLVRNMQ HGGCVDEYLQ 310 320 330 340 350 360 DQLILFMALA KGKSSVRSGP ITLHTKTAIF IAETLTKAKF TVTPEAGTNI IECEGIGLEN RHG

References

[1]

"The amphioxus genome and the evolution of the chordate karyotype." US DOE Joint Genome Institute (JGI-PGF) Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J. , Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H., Satoh N., Rokhsar D.S. Nature 453:1064-1071(2008) [PubMed: 18563158] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 EMBL EEN56506.1. Tissue: Testes EMBL EEN56506.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666551 Genomic DNA. Translation: EEN56506.1.
RefSeq	XP_002600494.1. XM_002600448.1.
UniGene	Bfl.12700.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7224516.
KEGG	bfo:BRAFLDRAFT_276703.
Phylogenomic databases
OMA	GGTDVAW.
PhylomeDB	C3YTD9.
Family and domain databases
InterPro	IPR013791. RNA3'-term_phos_cycl_insert. IPR023797. RNA3'_phos_cyclase_dom. IPR000228. RNA3'_term_phos_cyc. IPR017770. RNA3'_term_phos_cyc_type_1. IPR020719. RNA3'_term_phos_cycl-like_CS. IPR013796. RNA3'_term_phos_cycl_insert. IPR013792. RNA3'P_cycl/enolpyr_Trfase_a/b. [Graphical view]
Gene3D	G3DSA:3.30.360.20. G3DSA:3.30.360.20. 1 hit. G3DSA:3.65.10.20. RNA3'_term_phos_cycl. 2 hits.
KO	K01974.
PANTHER	PTHR11096. RNA3'_term_phos_cycl. 1 hit.
Pfam	PF01137. RTC. 1 hit. PF05189. RTC_insert. 1 hit. [Graphical view]
PIRSF	PIRSF005378. RNA3'_term_phos_cycl_euk. 1 hit.
SUPFAM	SSF52913. RNA3'-term_phos_cycl_insert. 1 hit. SSF55205. RNA3'_cycl/enolpyr_transf_A/B. 2 hits.
TIGRFAMs	TIGR03399. RNA_3prim_cycl. 1 hit.
PROSITE	PS01287. RTC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3YTD9_BRAFL

Accession

Primary (citable) accession number: C3YTD9

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)