C3YM54 (C3YM54_BRAFL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL EEN58648.1

Gene names

ORF Names:

BRAFLDRAFT_123025 EMBL EEN58648.1

Organism

Branchiostoma floridae (Florida lancelet) (Amphioxus) [Reference proteome]

Taxonomic identifier

7739 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma

Protein attributes

Sequence length	186 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	exosome (RNase complex) Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3YM54 [UniParc]. Last modified July 28, 2009. Version 1. Checksum: 8CE4A0C08F10AD22	FASTA	186	20,253
	10 20 30 40 50 60 MADSVGKVVI PGDILSEFRA SEKTSKVALG PGLRQEGEEV LVTKGGILRH KEPNLYWIDC 70 80 90 100 110 120 HQRRVGDLVF AKLLVANKDM EPELVCIDSG GHSSGYGVIP ADGGFMVHTS LNLVRKILSP 130 140 150 160 170 180 NCDILKFLGK NVPFETAVGM NGRIWVKAKT PKDTIVVANA IASSEHMTNA QIRTMIRQLL DKLSGF

References

[1]

"The amphioxus genome and the evolution of the chordate karyotype." US DOE Joint Genome Institute (JGI-PGF) Putnam N.H., Butts T., Ferrier D.E., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.K., Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J., Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J. , Kapitonov V.V., Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A., Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T., Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W., Satoh N., Rokhsar D.S. Nature 453:1064-1071(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S238N-H82 EMBL EEN58648.1. Tissue: Testes EMBL EEN58648.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	GG666529 Genomic DNA. Translation: EEN58648.1.
RefSeq	XP_002602636.1. XM_002602590.1.
UniGene	Bfl.18179.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7235640.
KEGG	bfo:BRAFLDRAFT_123025.
Phylogenomic databases
eggNOG	NOG270967.
KO	K03681.
OMA	EMARHAQ.
Family and domain databases
InterPro	IPR026699. Exosome_RNA_bind1/RRP40/RRP4. [Graphical view]
PANTHER	PTHR21321. PTHR21321. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C3YM54_BRAFL

Accession

Primary (citable) accession number: C3YM54

Entry history

Integrated into UniProtKB/TrEMBL:	July 28, 2009
Last sequence update:	July 28, 2009
Last modified:	February 6, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)