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C3YM52

- C3YM52_BRAFL

UniProt

C3YM52 - C3YM52_BRAFL

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Protein

Histone deacetylase

Gene

BRAFLDRAFT_281552

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone.UniRule annotation

GO - Molecular functioni

  1. NAD-dependent histone deacetylase activity (H3-K14 specific) Source: UniProtKB-EC
  2. NAD-dependent histone deacetylase activity (H3-K18 specific) Source: UniProtKB-EC
  3. NAD-dependent histone deacetylase activity (H3-K9 specific) Source: UniProtKB-EC
  4. NAD-dependent histone deacetylase activity (H4-K16 specific) Source: UniProtKB-EC

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulatorUniRule annotation, HydrolaseUniRule annotationSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseUniRule annotation (EC:3.5.1.98UniRule annotation)
Gene namesi
ORF Names:BRAFLDRAFT_281552Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI281552.

Structurei

3D structure databases

ProteinModelPortaliC3YM52.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the histone deacetylase family. HD Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0123.
InParanoidiC3YM52.
KOiK11404.
OMAiNFHYGPG.

Family and domain databases

Gene3Di3.40.800.20. 1 hit.
InterProiIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFiPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSiPR01270. HDASUPER.
PR01271. HISDACETLASE.

Sequencei

Sequence statusi: Complete.

C3YM52-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGSTKTVAYF FDPDVGNFHY GQGHPMKPHR LALTHSLVLH YGLYKRMQVY
60 70 80 90 100
RPYRATVHDM CRFHSEDYID FLQRVTPQNV QNFTKSLQQF NVGDDCPVFP
110 120 130 140 150
GLFNFCSMYT GATLEGAVKL NNNICDIAVN WAGGLHHAKK FEASGFCYVN
160 170 180 190 200
DIVIGILELL KYHPRVLYVD IDIHHGDGVQ EAFYLTDRVM TVSFHKYGNH
210 220 230 240 250
FFPGTGDMYE VGAEGGKYYS LNVPLKDGID DHNYRQLFNP IMQQVVEFFR
260 270 280 290 300
PTCIVLQCGA DSLGCDRLGC FNLSVKGHGE CVSFMKGFNL PLLVLGGGGY
310 320 330 340 350
TVRNVARCWT HETALLLDEE VNNELPYNEY FEYFSPDFTL HPDTSTRIEN
360 370 380 390 400
CNTKGYLEQI RQTINDNLKS LSHAPSVQMH DIPPDLFSLE VVEEPDPDIR
410 420 430
ESVQDQDNRI EPANEYYDGD KDQDRDNDLD V
Length:431
Mass (Da):49,185
Last modified:July 28, 2009 - v1
Checksum:i9B647A80C9E8953C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666529 Genomic DNA. Translation: EEN58646.1.
RefSeqiXP_002602634.1. XM_002602588.1.
UniGeneiBfl.13769.

Genome annotation databases

GeneIDi7235651.
KEGGibfo:BRAFLDRAFT_281552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666529 Genomic DNA. Translation: EEN58646.1 .
RefSeqi XP_002602634.1. XM_002602588.1.
UniGenei Bfl.13769.

3D structure databases

ProteinModelPortali C3YM52.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7739.JGI281552.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7235651.
KEGGi bfo:BRAFLDRAFT_281552.

Phylogenomic databases

eggNOGi COG0123.
InParanoidi C3YM52.
KOi K11404.
OMAi NFHYGPG.

Family and domain databases

Gene3Di 3.40.800.20. 1 hit.
InterProi IPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view ]
PANTHERi PTHR10625. PTHR10625. 1 hit.
Pfami PF00850. Hist_deacetyl. 1 hit.
[Graphical view ]
PIRSFi PIRSF037913. His_deacetylse_1. 1 hit.
PRINTSi PR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3YM52_BRAFL
AccessioniPrimary (citable) accession number: C3YM52
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3