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Protein
Submitted name:

Uncharacterized protein

Gene

BRAFLDRAFT_124679

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi42 – 117Nuclear receptorPROSITE-ProRule annotationAdd BLAST76
DNA bindingi620 – 695Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:BRAFLDRAFT_124679Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
Proteomesi
  • UP000001554 Componenti: Partially assembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI124679.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini42 – 117Nuclear receptorInterPro annotationAdd BLAST76
Domaini620 – 695Nuclear receptorInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.SAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
InParanoidiC3YIU8.
OMAiVHINTEM.

Family and domain databases

Gene3Di3.30.50.10. 2 hits.
InterProiView protein in InterPro
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 2 hits.
PRINTSiPR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 2 hits.
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 2 hits.
PS51030. NUCLEAR_REC_DBD_2. 2 hits.

Sequencei

Sequence statusi: Complete.

C3YIU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIIAKEVPSS IMNDKVTVDS IFEDEDGSND EKTLPRPPEV DRTNCVVCGD
60 70 80 90 100
KASGFHYGVY SCEGCKGFFR RSVNRGYVKA CRWGNKCSMD LHSRRRCPDC
110 120 130 140 150
RLRSCKAAGM RPDCLLTQAQ CRSKVMWRQR QASKSSAAGS KGGSAGTSPL
160 170 180 190 200
SSQSVASNQS MEEHFSFPTV SEIPTTVDNG LQLPESDNVQ PFTSEAADDS
210 220 230 240 250
SAQQLFEELM ASFDVDSTNP MFARSDSTGS EDVLSFLSLL DNDSELFPTV
260 270 280 290 300
APSAVNSAAT AHPATSQIAI VAPLHVEDTS THTEAFPVLQ AQPNSSENGS
310 320 330 340 350
TKDLPIVHSK DQSLVLSHSD PSVNSFPGKP EAPATRMSQT PGKNETNDDA
360 370 380 390 400
SDDLVRQKST PEVCGSKKMF VRPGITEELA PNHQLMISEI FEYWKENAAA
410 420 430 440 450
EAKYNQKCYE ESMKEGTPDE KRRRTLHDGD MSVRRYVSYC KSLKGFNDLS
460 470 480 490 500
TADQIGVIKG SIFEYGIMKG TACTDDFGFE KCRQIGLLWY TKEVTNMLMD
510 520 530 540 550
WYKGMKKLDV DPMTINILCG IIVLAPDRDN VNDRATLESA QQLYIDLLQA
560 570 580 590 600
YCKVAYPGEP PMFPRLVSKL AEVRSVGTGC QTGLRPEFEL KCAMSERVTV
610 620 630 640 650
IAIFEEEEPM TLPGPQDVES GNCLVCGEKA SGFHYGVFSC ESCKGFFRRS
660 670 680 690 700
VHKGSVKVCK FGNRCCLNPS TKRSCADCRL RLCKAAGMRP DCLLTDAQRR
710 720 730 740 750
SKSLWRHHRP ASQSSNPGPS SSPSPLFNQN GDISSSASGT SSPPWSDDGS
760 770 780 790 800
SSTAQGIMGD PEVARMFAKP ELVQLLAPNH KEIISEILGY WKKNASEERR
810 820 830 840
HIEELCNDTL RARPFRKXAE LPEARRCLYS EMHRFLQGNP GIQGPLHR
Length:848
Mass (Da):93,546
Last modified:July 28, 2009 - v1
Checksum:i603D0D9A8F87ABC9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666516 Genomic DNA. Translation: EEN59822.1.
RefSeqiXP_002603811.1. XM_002603765.1.
UniGeneiBfl.3943.

Genome annotation databases

GeneIDi7243063.
KEGGibfo:BRAFLDRAFT_124679.

Entry informationi

Entry nameiC3YIU8_BRAFL
AccessioniPrimary (citable) accession number: C3YIU8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: September 27, 2017
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported