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Protein
Submitted name:

Uncharacterized protein

Gene

BRAFLDRAFT_124678

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi32 – 107Nuclear receptorPROSITE-ProRule annotationAdd BLAST76
DNA bindingi580 – 655Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:BRAFLDRAFT_124678Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
Proteomesi
  • UP000001554 Componenti: Partially assembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI124678.

Structurei

3D structure databases

ProteinModelPortaliC3YIU7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini32 – 107Nuclear receptorInterPro annotationAdd BLAST76
Domaini580 – 655Nuclear receptorInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.SAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
InParanoidiC3YIU7.

Family and domain databases

Gene3Di3.30.50.10. 2 hits.
InterProiView protein in InterPro
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 2 hits.
PF00105. zf-C4. 2 hits.
PRINTSiPR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 2 hits.
SM00399. ZnF_C4. 2 hits.
SUPFAMiSSF48508. SSF48508. 2 hits.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 2 hits.
PS51030. NUCLEAR_REC_DBD_2. 2 hits.

Sequencei

Sequence statusi: Complete.

C3YIU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKQVTLAEI FDEELSKDGD GVEVPPPMEL AAGDCLVCGD KASGFHYGVF
60 70 80 90 100
SCEGCKGFFR RSVTRGHVKA CRWGNQCSMD LYTRRRCPEC RLRSCKAAGM
110 120 130 140 150
RPDCLLTQAQ CRSKLLWRKS IAPKPVKSER AASSSTTNSQ DSPTMPNPDQ
160 170 180 190 200
SGVPDQVSHK SSLSPAAPES SYTRSSSHDA LKWVTSTVNK QSTEDDDTHS
210 220 230 240 250
TVREVTSPSV DSVHGPSRSV STGNNDMLSF INVIDTDLEV GSNATSLERI
260 270 280 290 300
ADVEPIIVGK EEVVTVAPEK CKKEEDTELV AETLLSLQTS ECKGAESDPI
310 320 330 340 350
RRRYLPEDLS QVARMENLFV RPDSIQELDK QHQELIKAIL EHWGQNIESE
360 370 380 390 400
RKHAIAMWED TEACKTLQEK QLRYVEHGNK FVERYISFCR TLHGFNSLHV
410 420 430 440 450
EDQINVVKAS STMGSIFENF IMRGPVFCKE TGLDVNIAQR LTAMMYTQEF
460 470 480 490 500
TDRVMKWCEG MWKLNVDPIT VHLLCCSVIL SPDRANVRGG EILEKAQEKY
510 520 530 540 550
IECLQAYCKV AYPDQPLMFA RLMGKLTEVR DIGASCEKHL RPDANIFSAM
560 570 580 590 600
NFQVTVSSIF EAAQSEQDEE RDLTPQDLTM GGCLVCGDKA SGFHYGVYSC
610 620 630 640 650
EGCKGFFRRS VTRGHVKACR WGNQCSMDLY TRRRCPECRL RSCKAAGMRP
660 670 680 690 700
DCLLTQAQRR SKTLWRQRQA SQPIKPESAV SSTNQELAQV PSPNQSGVLD
710 720 730 740 750
QPCQQDQPLV TASEIASLLS SAGPDRVLTT QSSSEMPSLH QNIAPCDSSS
760 770 780 790 800
FFDEVVSVFI DVTQDNIQYC RSESSGSEDM LSFFALLANG SELLSEPICL
810 820 830 840 850
DTIPSVSPVP SSTTEGGADT SLQDDSRTEH AQTLLSLHTG VKYEAPLPTN
860 870 880 890 900
SLSELLKSTG SSANQKPDLP SSNEVADCKT NSVDSCLGLS VAPAKYDEPV
910 920 930 940 950
LGTSNAGSTM SKLFIRPQLM QQLSSNHQAI ISDILAYLKE ATEAGRRHTL
960 970 980 990 1000
KLYKEALTCR TLHEKRMLCV QSGTVTVQKY ITFSKSLQGF NDLPLDDQVA
1010 1020 1030 1040 1050
VVKKVLNPVH TQEFMSMLKS WYEGMWRLNI DSITVHLLIC AVILSPDRPN
1060 1070 1080 1090 1100
VGARGTLERA QECYVECLHA YCKVAYTDEP MMFPRLLSKL TEVRSVGQAC
1110 1120
ERSLLTECGP MVKENPLASE ICSPD
Length:1,125
Mass (Da):124,717
Last modified:July 28, 2009 - v1
Checksum:iC5766D271C785497
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666516 Genomic DNA. Translation: EEN59821.1.
RefSeqiXP_002603810.1. XM_002603764.1.

Genome annotation databases

GeneIDi7243526.
KEGGibfo:BRAFLDRAFT_124678.

Entry informationi

Entry nameiC3YIU7_BRAFL
AccessioniPrimary (citable) accession number: C3YIU7
Entry historyiIntegrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: September 27, 2017
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported