ID   C3Y342_BRAFL            Unreviewed;       584 AA.
AC   C3Y342;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 78.
DE   RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN   ORFNames=BRAFLDRAFT_93483 {ECO:0000313|EMBL:EEN65454.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN65454.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN65454.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN65454.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
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DR   EMBL; GG666482; EEN65454.1; -; Genomic_DNA.
DR   RefSeq; XP_002609444.1; XM_002609398.1.
DR   AlphaFoldDB; C3Y342; -.
DR   STRING; 7739.C3Y342; -.
DR   eggNOG; ENOG502QQ8V; Eukaryota.
DR   InParanoid; C3Y342; -.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR   GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR   CDD; cd16504; RING-HC_COP1; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR042755; COP1.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR017907; Znf_RING_CS.
DR   PANTHER; PTHR44080; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR   PANTHER; PTHR44080:SF1; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR   Pfam; PF00400; WD40; 3.
DR   Pfam; PF13923; zf-C3HC4_2; 1.
DR   SMART; SM00184; RING; 1.
DR   SMART; SM00320; WD40; 4.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 1.
DR   PROSITE; PS00518; ZF_RING_1; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00175}.
FT   DOMAIN          35..73
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   REPEAT          375..407
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          1..23
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   584 AA;  67792 MW;  51083F280AEE60B1 CRC64;
     MAGRTPTRRR LKRPQPPIYN GIINTDEDKN NDFVCPICFD MIEEAHMTKC GHSFCFKCIQ
     QSLEESNRCP KCNFVIEKTD QIFPNFLLNE LILKHRQRLE ERKRVKLDQP NGMKLTEFQE
     LLSHEDDNLD ITDVNLMLEV LYQKKTRLEA DSIAAQNQIL KEFLQHARRR KQEINWYFSY
     LPLHFVQQLD KLMGEVSVLD QDMQRVQVSR YHWLNSTLAS RRTRLDQHFD DLEKCYFSIR
     LKEFGQTETH STDSLCEFTD SLTKFTKYSG FRPLATLSYA SDIYNGSSIV SSIEFDRDNE
     YFAIAGVTKK IKVFEYGTVI RDAVDIHYPC SEMACNSKIS CVCWSSYHKG MLASSDYEGT
     VTLWDAFNAT KSRMFQEHEK RCWSVDFNHV DPKLLASGSD DAKVKLWATN MEHSVACLEA
     KANVCCVKFN PNSRFHIAFG SADHCVHYYD LRNTRQALNV LKGHRKAVSY AKFVNSQEIV
     SAYHWLNSTL ASRRTRLDQH FDDLEKCYFS IRLKEFGQTE THSTDSLCEF TDSLTKFTKY
     SGFRPLATLS YASDIYNGSS IVSRYSSCHL TPCLIFIYKV LLSS
//