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Protein
Submitted name:

Putative uncharacterized protein

Gene

BRAFLDRAFT_93483

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:BRAFLDRAFT_93483Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI93483.

Structurei

3D structure databases

ProteinModelPortaliC3Y342.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotation, WD repeatUniRule annotation, Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiCOG2319.
InParanoidiC3Y342.
KOiK10143.
OMAiTETHSTD.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
IPR018957. Znf_C3HC4_RING-type.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF00400. WD40. 3 hits.
PF00097. zf-C3HC4. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
SM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3Y342-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGRTPTRRR LKRPQPPIYN GIINTDEDKN NDFVCPICFD MIEEAHMTKC
60 70 80 90 100
GHSFCFKCIQ QSLEESNRCP KCNFVIEKTD QIFPNFLLNE LILKHRQRLE
110 120 130 140 150
ERKRVKLDQP NGMKLTEFQE LLSHEDDNLD ITDVNLMLEV LYQKKTRLEA
160 170 180 190 200
DSIAAQNQIL KEFLQHARRR KQEINWYFSY LPLHFVQQLD KLMGEVSVLD
210 220 230 240 250
QDMQRVQVSR YHWLNSTLAS RRTRLDQHFD DLEKCYFSIR LKEFGQTETH
260 270 280 290 300
STDSLCEFTD SLTKFTKYSG FRPLATLSYA SDIYNGSSIV SSIEFDRDNE
310 320 330 340 350
YFAIAGVTKK IKVFEYGTVI RDAVDIHYPC SEMACNSKIS CVCWSSYHKG
360 370 380 390 400
MLASSDYEGT VTLWDAFNAT KSRMFQEHEK RCWSVDFNHV DPKLLASGSD
410 420 430 440 450
DAKVKLWATN MEHSVACLEA KANVCCVKFN PNSRFHIAFG SADHCVHYYD
460 470 480 490 500
LRNTRQALNV LKGHRKAVSY AKFVNSQEIV SAYHWLNSTL ASRRTRLDQH
510 520 530 540 550
FDDLEKCYFS IRLKEFGQTE THSTDSLCEF TDSLTKFTKY SGFRPLATLS
560 570 580
YASDIYNGSS IVSRYSSCHL TPCLIFIYKV LLSS
Length:584
Mass (Da):67,792
Last modified:July 28, 2009 - v1
Checksum:i51083F280AEE60B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666482 Genomic DNA. Translation: EEN65454.1.
RefSeqiXP_002609444.1. XM_002609398.1.

Genome annotation databases

GeneIDi7241783.
KEGGibfo:BRAFLDRAFT_93483.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG666482 Genomic DNA. Translation: EEN65454.1.
RefSeqiXP_002609444.1. XM_002609398.1.

3D structure databases

ProteinModelPortaliC3Y342.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7739.JGI93483.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi7241783.
KEGGibfo:BRAFLDRAFT_93483.

Phylogenomic databases

eggNOGiCOG2319.
InParanoidiC3Y342.
KOiK10143.
OMAiTETHSTD.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
3.30.40.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
IPR018957. Znf_C3HC4_RING-type.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PfamiPF00400. WD40. 3 hits.
PF00097. zf-C3HC4. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
SM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3Y342_BRAFL
AccessioniPrimary (citable) accession number: C3Y342
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.