Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C3XPG8

- C3XPG8_BRAFL

UniProt

C3XPG8 - C3XPG8_BRAFL

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

DNA ligase

Gene

BRAFLDRAFT_119901

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
  4. zinc ion binding Source: InterPro

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:BRAFLDRAFT_119901Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma
ProteomesiUP000001554: Partially assembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi7739.JGI119901.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
InParanoidiC3XPG8.
KOiK10776.
OMAiLFSEMKH.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
3.40.50.10190. 1 hit.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR019406. Znf_C2H2_APLF-like.
IPR001510. Znf_PARP.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF10283. zf-CCHH. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS00347. PARP_ZN_FINGER_1. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3XPG8 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHRENKGLRT SRFCVEYAKQ GRAGCKKCKQ KIEKGLPRIG KIVPNFFHEG
60 70 80 90 100
DGEMKQWYHV ACIFETFQRA RATTKKIEDA SDLEGWEDME DEEKQTILKL
110 120 130 140 150
IKELESKAKS PKKKVVQATL STKGKIQSPT KKAASSATVS DDSPAAGPSS
160 170 180 190 200
SSSASTSVSM TSPTPTPDID HKDNAFREFR RLCALIAEEP GYNAKTKLVS
210 220 230 240 250
DFLKKGSNGD GFKGDTFLVV KLLLPGVVKR VYNLNNKQLL KHFANIFGVN
260 270 280 290 300
LADMLTDLEL GDVSETVRKF FEESERCLPA KKSKLTIQEV DESLEILAQM
310 320 330 340 350
TKEDDQMREL NKIAKKCTAN DLKVVVRLIK HDLRINAGAK HILEGLDPNA
360 370 380 390 400
YPAFQASRNL ADVVERVVAN GCAPGMKKSL SIKANLMTPV LPMLAEACKS
410 420 430 440 450
VEMAMRKCPN GMYAEIKYDG ERVQVHKQGN KFEYFSRSLK PVLPHKVAHF
460 470 480 490 500
KDYIPKAFPH GSNMILDSEV LLVDTNTGNP LPFGTLGIHK KQQFSDAQVA
510 520 530 540 550
LFVFDCIYFN GETLMDRPIS ERRKFLEDNM TVIPNRVVLS EYRYITEPGD
560 570 580 590 600
LSDMIGRVIR DGLEGLVLKD TKSIYEPGKR HWLKVKKDYL EQGAMADTAD
610 620 630 640 650
LVVLGAFYGT GNKGGLKSVF LMGVYDPDSD KWCTVTKCGN GHDDNTIAKL
660 670 680 690 700
NKELAMVKIS KDMSKVPKWL KITKNLVPDF VCADPKKAPV WEITGAEFSK
710 720 730 740 750
SEAHTADGIS IRFPRVTKIR DDKDWKSATN LKQLKHLFKT SKETSDIPDL
760 770 780 790 800
LKGKGKSPRK PVKVKVEEED DDDDDDDDSN GGASSNGVTP IKGMKRKAEE
810 820 830 840 850
DSPRTPKKSK PTCRYGATCY QTGKEHLDKF DHPTRKSPKK SNSAAKSVLP
860 870 880 890 900
DVFCGIKLFL PDTVENYALL RRYFVAYDGD IVQDYAMSQA THVVEDPEQK
910 920
NMNGKTDAQL VTVDWLWQCI KRKQLVPV
Length:928
Mass (Da):103,861
Last modified:July 28, 2009 - v1
Checksum:i3CD9F7EE4715580B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666451 Genomic DNA. Translation: EEN69839.1.
RefSeqiXP_002613830.1. XM_002613784.1.
UniGeneiBfl.20221.

Genome annotation databases

GeneIDi7222688.
KEGGibfo:BRAFLDRAFT_119901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG666451 Genomic DNA. Translation: EEN69839.1 .
RefSeqi XP_002613830.1. XM_002613784.1.
UniGenei Bfl.20221.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7739.JGI119901.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7222688.
KEGGi bfo:BRAFLDRAFT_119901.

Phylogenomic databases

eggNOGi COG1793.
InParanoidi C3XPG8.
KOi K10776.
OMAi LFSEMKH.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
3.40.50.10190. 1 hit.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR019406. Znf_C2H2_APLF-like.
IPR001510. Znf_PARP.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF10283. zf-CCHH. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS00347. PARP_ZN_FINGER_1. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S238N-H82Imported.
    Tissue: TestesImported.

Entry informationi

Entry nameiC3XPG8_BRAFL
AccessioniPrimary (citable) accession number: C3XPG8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 28, 2009
Last sequence update: July 28, 2009
Last modified: October 29, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3