Skip Header

Contribute Send feedback
Read comments (?) or add your own

C3PNS7 (C3PNS7_RICAE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Tryptophan--tRNA ligase HAMAP-Rule MF_00140
EC=6.1.1.2 HAMAP-Rule MF_00140
Alternative name(s):
Tryptophanyl-tRNA synthetase HAMAP-Rule MF_00140
Gene names
Name:trpS HAMAP-Rule MF_00140 EMBL ACP53587.1
Ordered Locus Names:RAF_ORF0697 EMBL ACP53587.1
OrganismRickettsia africae (strain ESF-5) [Complete proteome] [HAMAP] EMBL ACP53587.1
Taxonomic identifier347255 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › spotted fever group ›

Protein attributes

Sequence length330 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp). SAAS SAAS024109 HAMAP-Rule MF_00140

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00140

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00140.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00140

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif11 – 199"HIGH" region By similarity HAMAP-Rule MF_00140
Motif195 – 1995"KMSKS" region By similarity HAMAP-Rule MF_00140

Sites

Binding site1981ATP By similarity HAMAP-Rule MF_00140

Sequences

Sequence LengthMass (Da)Tools
C3PNS7 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 964BF64DDE81E6AA

FASTA33037,503
        10         20         30         40         50         60 
MKKTVLSGVQ ATGSLHLGNY LGAIKNWVKM QEEYNCFFFL ADLHAITVDI KPSELNNSIM 

        70         80         90        100        110        120 
EVLAVYLAAG LNPDKVTIFA QSMVKEHTEL AWLLNCVTPL GWLKRMTQFK DKAGSDQEKA 

       130        140        150        160        170        180 
CLGLFSYPVL MAADILIYKA DIVPVGEDQK QHLELTRDIA GVINRKFNKE ILKVPEVLIS 

       190        200        210        220        230        240 
ETGTRIMSLR DGLKKMSKSD ISDFSRINLK DNNDLIHQKI KKAKTDHLSF VSYDQETRPE 

       250        260        270        280        290        300 
ISNLLDIYSS LSEESLEKII GNYQNQGFAK FKEDLAEIII TNLQPIRNKY LELMNDKEYL 

       310        320        330 
LKILHKGAEK ARIRASETVN EVKEQFGFVI

« Hide

References

[1]"Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction."
Fournier P.E., El Karkouri K., Leroy Q., Robert C., Giumelli B., Renesto P., Socolovschi C., Parola P., Audic S., Raoult D.
BMC Genomics 10:166-166(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ESF-5 EMBL ACP53587.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001612 Genomic DNA. Translation: ACP53587.1.
RefSeqYP_002845330.1. NC_012633.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING347255.RAF_ORF0697.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP53587; ACP53587; RAF_ORF0697.
GeneID7815672.
KEGGraf:RAF_ORF0697.
PATRIC17873433. VBIRicAfr6986_0845.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0180.
HOGENOMHOG000059940.
KOK01867.
OMAHDCLYCV.
ProtClustDBPRK00927.

Enzyme and pathway databases

BioCycRAFR347255:GJCT-656-MONOMER.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
HAMAPMF_00140_B. Trp_tRNA_synth_B.
InterProIPR002305. aa-tRNA-synth_Ic.
IPR014729. Rossmann-like_a/b/a_fold.
IPR002306. Trp-tRNA-ligase.
IPR024109. Trp-tRNA-ligase_bac-type.
[Graphical view]
PANTHERPTHR10055. PTHR10055. 1 hit.
PfamPF00579. tRNA-synt_1b. 1 hit.
[Graphical view]
PRINTSPR01039. TRNASYNTHTRP.
TIGRFAMsTIGR00233. trpS. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC3PNS7_RICAE
AccessionPrimary (citable) accession number: C3PNS7
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info