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C3NW21 (C3NW21_VIBCJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.3 EMBL ACQ59238.1
Gene names
Ordered Locus Names:VCD_001055 EMBL ACQ59238.1
OrganismVibrio cholerae serotype O1 (strain MJ-1236) [Complete proteome] [HAMAP] EMBL ACQ59238.1
Taxonomic identifier593588 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length597 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   LigandBiotin RuleBase RU000428
   Molecular functionLyase EMBL ACQ59238.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processsodium ion transport

Inferred from electronic annotation. Source: InterPro

   Molecular_functionoxaloacetate decarboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C3NW21 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 033BF5F2209F5468

FASTA59764,795
        10         20         30         40         50         60 
MSMSKPLAIT DVVLRDAHQS LFATRMRIED MLPIAAELDK IGYWSLETWG GATFDACIRF 

        70         80         90        100        110        120 
LGEDPWERLR ALKKAMPNTP MQMLLRGQNL LGYRHYADDV VEKFVERAHV NGMDVFRIFD 

       130        140        150        160        170        180 
AMNDVRNFEK AVKATIGVGA HAQGTLSYTT SPVHNTQTWV DLAKRLEDLG CHSLCIKDMS 

       190        200        210        220        230        240 
GLLKPYEAEE LITRIKQSCA VPLALHCHAT TGLSTATAVK AVEAGIDILD TAISSMSQTY 

       250        260        270        280        290        300 
GHTPTETVVA MLQDTPRDTQ LKLEQLEPIA AYFREVRKKY AKFEGQLKGV DSRILIAQVP 

       310        320        330        340        350        360 
GGMLTNMESQ LKEQGAAHRI DEVLEEIPRV RQDLGFIPLV TPTSQIVGTQ AVINVLTGER 

       370        380        390        400        410        420 
YKSITKETAG VLKGEYGATP ASVNAELQAR VLEGGQAITC RPADLLQDEL DHLTKELLEK 

       430        440        450        460        470        480 
AQVEKITLAD AKVDDVLTYA LFPQVGLKFL KNRHNPEAFE PAPGKEPAPV ATAPASTKPA 

       490        500        510        520        530        540 
AGIESYSVKV DGVVYDVEVG SQGQLTSVVP AGQKAAPKLA VATPTQGAEA VAAPLAGTIF 

       550        560        570        580        590 
KIQVEQGDEV AEGDVLIVLE AMKMETEIRA ARSGVIQELH VKEGDSVRVG ASLLSLA 

« Hide

References

[1]"Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae."
Chun J., Grim C.J., Hasan N.A., Lee J.H., Choi S.Y., Haley B.J., Taviani E., Jeon Y.-S., Kim D.W., Lee J.-H., Brettin T.S., Bruce D.C., Challacombe J.F., Detter J.C., Han C.S., Munk A.C., Chertkov O., Meincke L. expand/collapse author list , Saunders E., Walters R.A., Huq A., Nair G.B., Colwell R.R.
Proc. Natl. Acad. Sci. U.S.A. 106:15442-15447(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ-1236.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001485 Genomic DNA. Translation: ACQ59238.1.
RefSeqYP_002876808.1. NC_012668.1.

3D structure databases

ProteinModelPortalC3NW21.
SMRC3NW21. Positions 1-480.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING593588.VCD_001055.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACQ59238; ACQ59238; VCD_001055.
GeneID7855355.
KEGGvcj:VCD_001055.
PATRIC20073314. VBIVibCho20143_1077.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0511.
HOGENOMHOG000231389.
KOK01571.
OMATYALYPQ.
OrthoDBEOG6CVV6Z.
ProtClustDBPRK14040.

Enzyme and pathway databases

BioCycVCHO593588:GI2R-38-MONOMER.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR001882. Biotin_BS.
IPR000089. Biotin_lipoyl.
IPR003379. Carboxylase_cons_dom.
IPR005776. OadA.
IPR000891. PYR_CT.
IPR011053. Single_hybrid_motif.
[Graphical view]
PfamPF00364. Biotin_lipoyl. 1 hit.
PF00682. HMGL-like. 1 hit.
PF02436. PYC_OADA. 1 hit.
[Graphical view]
SUPFAMSSF51230. SSF51230. 1 hit.
TIGRFAMsTIGR01108. oadA. 1 hit.
PROSITEPS00188. BIOTIN. 1 hit.
PS50968. BIOTINYL_LIPOYL. 1 hit.
PS50991. PYR_CT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3NW21_VIBCJ
AccessionPrimary (citable) accession number: C3NW21
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: April 16, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)