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C3NRN6 (C3NRN6_VIBCJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.3.2.2 EMBL ACQ61376.1
Gene names
Ordered Locus Names:VCD_003216 EMBL ACQ61376.1
OrganismVibrio cholerae serotype O1 (strain MJ-1236) [Complete proteome] [HAMAP] EMBL ACQ61376.1
Taxonomic identifier593588 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length456 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C3NRN6 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 1B57F9A5A1FDD859

FASTA45651,335
        10         20         30         40         50         60 
MELSALTAVS PVDGRYGSKT IALRSIFSEF GLLKYRTIVE IRWLQKLAAT AEIAEVPAFS 

        70         80         90        100        110        120 
AEANQFLDAI AANFNEADAL RIKEIERTTN HDVKAVEYFL KEKVAAMPEL HAVNEFIHFA 

       130        140        150        160        170        180 
CTSEDINNTS HALMLKEARD TVILPEIRNV IDAIRKLAEE YRDIPLLSRT HGQPASPSTM 

       190        200        210        220        230        240 
GKEMANVAYR MERQYKQIAN VEILAKINGA VGNYNAHLSA YPTVDWHKFS EEFITESLGV 

       250        260        270        280        290        300 
DWNPYTTQIE PHDYIAELFE AVARFNTILI DFDRDVWGYI ALGHFKQRTI AGEIGSSTMP 

       310        320        330        340        350        360 
HKVNPIDFEN SEGNLGLANA VFTHLAQKLP ISRWQRDLTD STVLRNLGVG VGYAIIAYTS 

       370        380        390        400        410        420 
TLKGISKLEV NRDALLAELD HNWEVLAEPI QTVMRRYGIE KPYEKLKELT RGKRVDGEAM 

       430        440        450 
RQFIDGLALP AEEKTRLKAM TPASYIGYAI ELTDKL 

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References

[1]"Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae."
Chun J., Grim C.J., Hasan N.A., Lee J.H., Choi S.Y., Haley B.J., Taviani E., Jeon Y.-S., Kim D.W., Lee J.-H., Brettin T.S., Bruce D.C., Challacombe J.F., Detter J.C., Han C.S., Munk A.C., Chertkov O., Meincke L. expand/collapse author list , Saunders E., Walters R.A., Huq A., Nair G.B., Colwell R.R.
Proc. Natl. Acad. Sci. U.S.A. 106:15442-15447(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MJ-1236.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001485 Genomic DNA. Translation: ACQ61376.1.
RefSeqYP_002878946.1. NC_012668.1.

3D structure databases

ProteinModelPortalC3NRN6.
SMRC3NRN6. Positions 1-456.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING593588.VCD_003216.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACQ61376; ACQ61376; VCD_003216.
GeneID7854806.
KEGGvcj:VCD_003216.
PATRIC20077833. VBIVibCho20143_3229.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0015.
HOGENOMHOG000252916.
KOK01756.
OMAPANYIGN.
OrthoDBEOG686NDB.

Enzyme and pathway databases

BioCycVCHO593588:GI2R-2290-MONOMER.

Family and domain databases

Gene3D1.10.275.10. 1 hit.
InterProIPR024083. Fumarase/histidase_N.
IPR020557. Fumarate_lyase_CS.
IPR000362. Fumarate_lyase_fam.
IPR022761. Fumarate_lyase_N.
IPR008948. L-Aspartase-like.
IPR004769. Pur_lyase.
IPR013539. PurB_C.
[Graphical view]
PANTHERPTHR11444. PTHR11444. 1 hit.
PfamPF08328. ASL_C. 1 hit.
PF00206. Lyase_1. 1 hit.
[Graphical view]
PRINTSPR00149. FUMRATELYASE.
SUPFAMSSF48557. SSF48557. 1 hit.
TIGRFAMsTIGR00928. purB. 1 hit.
PROSITEPS00163. FUMARATE_LYASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3NRN6_VIBCJ
AccessionPrimary (citable) accession number: C3NRN6
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)