Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA-directed RNA polymerase subunit A''

Gene

rpoA2

Organism
Sulfolobus islandicus (strain M.16.27)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSISL427318:GH3D-2067-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit A''UniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoA2UniRule annotation
Ordered Locus Names:M1627_1990
OrganismiSulfolobus islandicus (strain M.16.27)
Taxonomic identifieri427318 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000002307 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 392392DNA-directed RNA polymerase subunit A''PRO_1000205983Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000222986.
KOiK03042.
OMAiRPIGRHG.

Family and domain databases

HAMAPiMF_00411. RNApol_arch_A.
InterProiIPR007081. RNA_pol_Rpb1_5.
IPR012757. RNAP_A2.
[Graphical view]
PfamiPF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02389. RNA_pol_rpoA2. 1 hit.

Sequencei

Sequence statusi: Complete.

C3MZM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDEKDKSYL EEKVKQASNI LPQKIVEDLK NLISNKEVLV TRDEIDKIFD
60 70 80 90 100
LAIKEYSEGL IAPGEAIGIV AAQSVGEPGT QMTLRTFHFA GIRELNVTLG
110 120 130 140 150
LPRLIEIVDA KKVPSTPMMT IYLTDEYKHD KEKALEVARK LEYTKIENVV
160 170 180 190 200
SSTSIDIASM SIILQLDNEM LKDKGVTVDD VKKAINRLKL GEFVIDESEG
210 220 230 240 250
NTLNISFANI DSIAALFKLR DKILNTKIKG IKGIKRAIVQ KKGDEYIILT
260 270 280 290 300
DGSNLSGVLS VKGVDIAKVE TNNIREIEEV FGIEAAREII IREISKVLAE
310 320 330 340 350
QGLDVDMRHI LLVADVMTRT GVVRQIGRHG VTGEKNSVLA RAAFEVTVKH
360 370 380 390
LLDAAARGDV EEFKGVVENI IIGHPIKLGT GMVELTMRPI LR
Length:392
Mass (Da):43,390
Last modified:June 16, 2009 - v1
Checksum:i982D42722F539826
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001401 Genomic DNA. Translation: ACP55861.1.
RefSeqiWP_012711886.1. NC_012632.1.

Genome annotation databases

EnsemblBacteriaiACP55861; ACP55861; M1627_1990.
GeneIDi8761976.
KEGGisim:M1627_1990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001401 Genomic DNA. Translation: ACP55861.1.
RefSeqiWP_012711886.1. NC_012632.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACP55861; ACP55861; M1627_1990.
GeneIDi8761976.
KEGGisim:M1627_1990.

Phylogenomic databases

HOGENOMiHOG000222986.
KOiK03042.
OMAiRPIGRHG.

Enzyme and pathway databases

BioCyciSISL427318:GH3D-2067-MONOMER.

Family and domain databases

HAMAPiMF_00411. RNApol_arch_A.
InterProiIPR007081. RNA_pol_Rpb1_5.
IPR012757. RNAP_A2.
[Graphical view]
PfamiPF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02389. RNA_pol_rpoA2. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M.16.27.

Entry informationi

Entry nameiRPOA2_SULIA
AccessioniPrimary (citable) accession number: C3MZM9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: June 16, 2009
Last modified: November 11, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.