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C3MR78 (IF6_SULIL) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Translation initiation factor 6

Short name=aIF-6
Gene names
Name:eif6
Ordered Locus Names:LS215_1895
OrganismSulfolobus islandicus (strain L.S.2.15 / Lassen #1) [Complete proteome] [HAMAP]
Taxonomic identifier429572 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus

Protein attributes

Sequence length223 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex By similarity. HAMAP-Rule MF_00032

Sequence similarities

Belongs to the eIF-6 family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Molecular functionInitiation factor
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processmature ribosome assembly

Inferred from electronic annotation. Source: InterPro

   Molecular_functionribosome binding

Inferred from electronic annotation. Source: InterPro

translation initiation factor activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 223223Translation initiation factor 6 HAMAP-Rule MF_00032
PRO_1000202009

Sequences

Sequence LengthMass (Da)Tools
C3MR78 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: EFA799EBF0764E0A

FASTA22324,503
        10         20         30         40         50         60 
MNLQRLSIFG TDNIGVYIYT NNKYTVVPRG LDSETKENIV QILGTELIEA EISRSFLLGI 

        70         80         90        100        110        120 
FISGNDNGIL LPKSTIDDEF RFLKENLRDC RVEVLNSKVT ALGNTILTNN KAALIYPEFN 

       130        140        150        160        170        180 
DIEEKIIKET LGVEEIRRGK IAQMITVGSV GVVTNKGGLV HVDTSEKELK ELEKLFSVKI 

       190        200        210        220 
DIGTVNFGSV FIRSGLVAND KGTLVGASTT GPEILRIQKA LGE 

« Hide

References

[1]"Biogeography of the Sulfolobus islandicus pan-genome."
Reno M.L., Held N.L., Fields C.J., Burke P.V., Whitaker R.J.
Proc. Natl. Acad. Sci. U.S.A. 106:8605-8610(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: L.S.2.15 / Lassen #1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001399 Genomic DNA. Translation: ACP35891.1.
RefSeqYP_002832536.1. NC_012589.1.

3D structure databases

ProteinModelPortalC3MR78.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING429572.LS215_1895.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP35891; ACP35891; LS215_1895.
GeneID7799538.
KEGGsis:LS215_1895.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1976.
HOGENOMHOG000230604.
KOK03264.
OMANDWCAFT.

Enzyme and pathway databases

BioCycSISL429572:GHOW-1964-MONOMER.

Family and domain databases

HAMAPMF_00032. eIF_6.
InterProIPR002769. eIF6.
[Graphical view]
PANTHERPTHR10784. PTHR10784. 1 hit.
PfamPF01912. eIF-6. 1 hit.
[Graphical view]
PIRSFPIRSF006413. IF-6. 1 hit.
SMARTSM00654. eIF6. 1 hit.
[Graphical view]
TIGRFAMsTIGR00323. eIF-6. 1 hit.
ProtoNetSearch...

Entry information

Entry nameIF6_SULIL
AccessionPrimary (citable) accession number: C3MR78
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: June 16, 2009
Last modified: May 14, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Translation initiation factors

List of translation initiation factor entries