Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

C3MIG9

- C3MIG9_RHISN

UniProt

C3MIG9 - C3MIG9_RHISN

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

NGR_c27850

Organism
Rhizobium sp. (strain NGR234)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSFRE394:GBYN-2776-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:NGR_c27850Imported
OrganismiRhizobium sp. (strain NGR234)Imported
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_c27850.

Structurei

3D structure databases

ProteinModelPortaliC3MIG9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3MIG9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAARSAPLSE YNRRRDFTKT REPKGAVAPA SGDRKRFLVQ KHDATRLHYD
60 70 80 90 100
FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY
110 120 130 140 150
GGGTVMLWDT GWWEPEGDPS KGLKKGKLSF RLHGSRMKGG WALVRMRPRD
160 170 180 190 200
GEKRENWLLV KETDEIASEE GESLIKENVT SVATGRTMDE IAGGKGEKRA
210 220 230 240 250
RVWHSNKSTA ANLKAGAIAG NDNPRKRQAR KSSGKLPAFK APQLATLVTK
260 270 280 290 300
APAGETWLNE AKFDGYRLIC AIGGGAVRCY TRNGLDWTEK FPAIAAALAE
310 320 330 340 350
LDCKSALIDG EVVALSDAGS SFSALQKALK TGASTRLYAF DLIELDGKDL
360 370 380 390 400
GRAPLIDRKE KLRGLLDSLG TTATVQYSEH VQGNGEHVLA AICKAGQEGI
410 420 430 440 450
IAKEAKAPYR SGRTRSWLKV KCTKRQEFVI GGYTPSSKKG RPFASILVGT
460 470 480 490 500
FEGGKLIYRG GVGTGFGEKV MEELAAAFAK RSRETPPFDS VPRERMRKAV
510 520 530 540 550
WLKPDLVAEV DFAEFTADGH VRHGSFEGLR EDKEAKAVKL ETAKPTGAAS
560 570 580 590 600
KAAKGKPSAN TGKASSPKGD TDVLGVQISH PDRILFEGQG ITKIDLARYY
610 620 630 640 650
AVVADRMLTF AADHPVSLVR CPQGGQRHCF FQKHTNDAFP EAIREVPITE
660 670 680 690 700
SSGETENYMY VHDAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP
710 720 730 740 750
DPSVDFTTVK NAARALRDEL ADIGLQSFAL VTGGKGVHVV VPLVRRASWD
760 770 780 790 800
DAKSFAKAVA QNIADRDPDH FVATMSKAKR KGRIFIDWLR NERGATAIAP
810 820 830 840 850
YSSRAREGGP IATPVGWDEL ERLSGANTFR IGDILERIEA DTDPWRDIGK
860
VKQSLTKKMM DSVIK
Length:865
Mass (Da):94,806
Last modified:June 16, 2009 - v1
Checksum:iE0F5109E6807A32A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001389 Genomic DNA. Translation: ACP26532.1.
RefSeqiYP_002827285.1. NC_012587.1.

Genome annotation databases

EnsemblBacteriaiACP26532; ACP26532; NGR_c27850.
GeneIDi7790439.
KEGGirhi:NGR_c27850.
PATRICi32312061. VBIRhiSp122450_5620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001389 Genomic DNA. Translation: ACP26532.1 .
RefSeqi YP_002827285.1. NC_012587.1.

3D structure databases

ProteinModelPortali C3MIG9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_c27850.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACP26532 ; ACP26532 ; NGR_c27850 .
GeneIDi 7790439.
KEGGi rhi:NGR_c27850.
PATRICi 32312061. VBIRhiSp122450_5620.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-2776-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234Imported.

Entry informationi

Entry nameiC3MIG9_RHISN
AccessioniPrimary (citable) accession number: C3MIG9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: October 1, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3