C3MIG9 (C3MIG9_RHISN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase protein EMBL ACP26532.1

Gene names

Ordered Locus Names:

NGR_c27850 EMBL ACP26532.1

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP] EMBL ACP26532.1

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	865 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACP26532.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3MIG9 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: E0F5109E6807A32A	FASTA	865	94,806
	10 20 30 40 50 60 MAARSAPLSE YNRRRDFTKT REPKGAVAPA SGDRKRFLVQ KHDATRLHYD FRLEWEGVLK 70 80 90 100 110 120 SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY GGGTVMLWDT GWWEPEGDPS 130 140 150 160 170 180 KGLKKGKLSF RLHGSRMKGG WALVRMRPRD GEKRENWLLV KETDEIASEE GESLIKENVT 190 200 210 220 230 240 SVATGRTMDE IAGGKGEKRA RVWHSNKSTA ANLKAGAIAG NDNPRKRQAR KSSGKLPAFK 250 260 270 280 290 300 APQLATLVTK APAGETWLNE AKFDGYRLIC AIGGGAVRCY TRNGLDWTEK FPAIAAALAE 310 320 330 340 350 360 LDCKSALIDG EVVALSDAGS SFSALQKALK TGASTRLYAF DLIELDGKDL GRAPLIDRKE 370 380 390 400 410 420 KLRGLLDSLG TTATVQYSEH VQGNGEHVLA AICKAGQEGI IAKEAKAPYR SGRTRSWLKV 430 440 450 460 470 480 KCTKRQEFVI GGYTPSSKKG RPFASILVGT FEGGKLIYRG GVGTGFGEKV MEELAAAFAK 490 500 510 520 530 540 RSRETPPFDS VPRERMRKAV WLKPDLVAEV DFAEFTADGH VRHGSFEGLR EDKEAKAVKL 550 560 570 580 590 600 ETAKPTGAAS KAAKGKPSAN TGKASSPKGD TDVLGVQISH PDRILFEGQG ITKIDLARYY 610 620 630 640 650 660 AVVADRMLTF AADHPVSLVR CPQGGQRHCF FQKHTNDAFP EAIREVPITE SSGETENYMY 670 680 690 700 710 720 VHDAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP DPSVDFTTVK NAARALRDEL 730 740 750 760 770 780 ADIGLQSFAL VTGGKGVHVV VPLVRRASWD DAKSFAKAVA QNIADRDPDH FVATMSKAKR 790 800 810 820 830 840 KGRIFIDWLR NERGATAIAP YSSRAREGGP IATPVGWDEL ERLSGANTFR IGDILERIEA 850 860 DTDPWRDIGK VKQSLTKKMM DSVIK

References

[1]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234 EMBL ACP26532.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001389 Genomic DNA. Translation: ACP26532.1.
RefSeq	YP_002827285.1. NC_012587.1.
3D structure databases
ProteinModelPortal	C3MIG9.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_c27850.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACP26532; ACP26532; NGR_c27850.
GeneID	7790439.
KEGG	rhi:NGR_c27850.
PATRIC	32312061. VBIRhiSp122450_5620.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	DWTIRSI.
ProtClustDB	CLSK2484757.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3MIG9_RHISN

Accession

Primary (citable) accession number: C3MIG9

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)