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Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

NGR_c27850

Organism
Rhizobium sp. (strain NGR234)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSFRE394:GBYN-2776-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:NGR_c27850Imported
OrganismiRhizobium sp. (strain NGR234)Imported
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_c27850.

Structurei

3D structure databases

ProteinModelPortaliC3MIG9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3MIG9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARSAPLSE YNRRRDFTKT REPKGAVAPA SGDRKRFLVQ KHDATRLHYD
60 70 80 90 100
FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY
110 120 130 140 150
GGGTVMLWDT GWWEPEGDPS KGLKKGKLSF RLHGSRMKGG WALVRMRPRD
160 170 180 190 200
GEKRENWLLV KETDEIASEE GESLIKENVT SVATGRTMDE IAGGKGEKRA
210 220 230 240 250
RVWHSNKSTA ANLKAGAIAG NDNPRKRQAR KSSGKLPAFK APQLATLVTK
260 270 280 290 300
APAGETWLNE AKFDGYRLIC AIGGGAVRCY TRNGLDWTEK FPAIAAALAE
310 320 330 340 350
LDCKSALIDG EVVALSDAGS SFSALQKALK TGASTRLYAF DLIELDGKDL
360 370 380 390 400
GRAPLIDRKE KLRGLLDSLG TTATVQYSEH VQGNGEHVLA AICKAGQEGI
410 420 430 440 450
IAKEAKAPYR SGRTRSWLKV KCTKRQEFVI GGYTPSSKKG RPFASILVGT
460 470 480 490 500
FEGGKLIYRG GVGTGFGEKV MEELAAAFAK RSRETPPFDS VPRERMRKAV
510 520 530 540 550
WLKPDLVAEV DFAEFTADGH VRHGSFEGLR EDKEAKAVKL ETAKPTGAAS
560 570 580 590 600
KAAKGKPSAN TGKASSPKGD TDVLGVQISH PDRILFEGQG ITKIDLARYY
610 620 630 640 650
AVVADRMLTF AADHPVSLVR CPQGGQRHCF FQKHTNDAFP EAIREVPITE
660 670 680 690 700
SSGETENYMY VHDAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP
710 720 730 740 750
DPSVDFTTVK NAARALRDEL ADIGLQSFAL VTGGKGVHVV VPLVRRASWD
760 770 780 790 800
DAKSFAKAVA QNIADRDPDH FVATMSKAKR KGRIFIDWLR NERGATAIAP
810 820 830 840 850
YSSRAREGGP IATPVGWDEL ERLSGANTFR IGDILERIEA DTDPWRDIGK
860
VKQSLTKKMM DSVIK
Length:865
Mass (Da):94,806
Last modified:June 16, 2009 - v1
Checksum:iE0F5109E6807A32A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001389 Genomic DNA. Translation: ACP26532.1.
RefSeqiWP_012709288.1. NC_012587.1.
YP_002827285.1. NC_012587.1.

Genome annotation databases

EnsemblBacteriaiACP26532; ACP26532; NGR_c27850.
GeneIDi7790439.
KEGGirhi:NGR_c27850.
PATRICi32312061. VBIRhiSp122450_5620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001389 Genomic DNA. Translation: ACP26532.1.
RefSeqiWP_012709288.1. NC_012587.1.
YP_002827285.1. NC_012587.1.

3D structure databases

ProteinModelPortaliC3MIG9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_c27850.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACP26532; ACP26532; NGR_c27850.
GeneIDi7790439.
KEGGirhi:NGR_c27850.
PATRICi32312061. VBIRhiSp122450_5620.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-2776-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234Imported.

Entry informationi

Entry nameiC3MIG9_RHISN
AccessioniPrimary (citable) accession number: C3MIG9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: March 4, 2015
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.