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C3MIG9

- C3MIG9_RHISN

UniProt

C3MIG9 - C3MIG9_RHISN

Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

NGR_c27850

Organism
Rhizobium sp. (strain NGR234)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (16 Jun 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-2776-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligase proteinImported
    Gene namesi
    Ordered Locus Names:NGR_c27850Imported
    OrganismiRhizobium sp. (strain NGR234)Imported
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_c27850.

    Structurei

    3D structure databases

    ProteinModelPortaliC3MIG9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiHVLAAIC.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C3MIG9-1 [UniParc]FASTAAdd to Basket

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    MAARSAPLSE YNRRRDFTKT REPKGAVAPA SGDRKRFLVQ KHDATRLHYD    50
    FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY 100
    GGGTVMLWDT GWWEPEGDPS KGLKKGKLSF RLHGSRMKGG WALVRMRPRD 150
    GEKRENWLLV KETDEIASEE GESLIKENVT SVATGRTMDE IAGGKGEKRA 200
    RVWHSNKSTA ANLKAGAIAG NDNPRKRQAR KSSGKLPAFK APQLATLVTK 250
    APAGETWLNE AKFDGYRLIC AIGGGAVRCY TRNGLDWTEK FPAIAAALAE 300
    LDCKSALIDG EVVALSDAGS SFSALQKALK TGASTRLYAF DLIELDGKDL 350
    GRAPLIDRKE KLRGLLDSLG TTATVQYSEH VQGNGEHVLA AICKAGQEGI 400
    IAKEAKAPYR SGRTRSWLKV KCTKRQEFVI GGYTPSSKKG RPFASILVGT 450
    FEGGKLIYRG GVGTGFGEKV MEELAAAFAK RSRETPPFDS VPRERMRKAV 500
    WLKPDLVAEV DFAEFTADGH VRHGSFEGLR EDKEAKAVKL ETAKPTGAAS 550
    KAAKGKPSAN TGKASSPKGD TDVLGVQISH PDRILFEGQG ITKIDLARYY 600
    AVVADRMLTF AADHPVSLVR CPQGGQRHCF FQKHTNDAFP EAIREVPITE 650
    SSGETENYMY VHDAKGLVAA VQMGTLEFHI WGATIDKLET PDRLVFDFDP 700
    DPSVDFTTVK NAARALRDEL ADIGLQSFAL VTGGKGVHVV VPLVRRASWD 750
    DAKSFAKAVA QNIADRDPDH FVATMSKAKR KGRIFIDWLR NERGATAIAP 800
    YSSRAREGGP IATPVGWDEL ERLSGANTFR IGDILERIEA DTDPWRDIGK 850
    VKQSLTKKMM DSVIK 865
    Length:865
    Mass (Da):94,806
    Last modified:June 16, 2009 - v1
    Checksum:iE0F5109E6807A32A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001389 Genomic DNA. Translation: ACP26532.1.
    RefSeqiYP_002827285.1. NC_012587.1.

    Genome annotation databases

    EnsemblBacteriaiACP26532; ACP26532; NGR_c27850.
    GeneIDi7790439.
    KEGGirhi:NGR_c27850.
    PATRICi32312061. VBIRhiSp122450_5620.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001389 Genomic DNA. Translation: ACP26532.1 .
    RefSeqi YP_002827285.1. NC_012587.1.

    3D structure databases

    ProteinModelPortali C3MIG9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_c27850.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACP26532 ; ACP26532 ; NGR_c27850 .
    GeneIDi 7790439.
    KEGGi rhi:NGR_c27850.
    PATRICi 32312061. VBIRhiSp122450_5620.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi HVLAAIC.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-2776-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234Imported.

    Entry informationi

    Entry nameiC3MIG9_RHISN
    AccessioniPrimary (citable) accession number: C3MIG9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 16, 2009
    Last sequence update: June 16, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3