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C3LVM0 (C3LVM0_VIBCM) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:VCM66_A0563 EMBL ACP07525.1
OrganismVibrio cholerae serotype O1 (strain M66-2) [Complete proteome] [HAMAP] EMBL ACP07525.1
Taxonomic identifier579112 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length465 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
C3LVM0 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: CC0B0B297F24E28C

FASTA46551,491
        10         20         30         40         50         60 
MKTFDPLSSY SPTHWRSEGD INTTAARRDW LTHVNDETTQ NLLQRDANVF LHQAMSTPCL 

        70         80         90        100        110        120 
APLASAAGCY LYDVSGKSYL DFHGNNVHQL GHGHPQVIEK ITEQMQTLPF APRRFTHETA 

       130        140        150        160        170        180 
IRCAEKLTEI AGGELNRVLF APGGTSVIGM ALKLARHITQ NFKVVSLWDA FHGASLDAIS 

       190        200        210        220        230        240 
VGGEACFRQG MGPLMAGVER IPPAITYRGA FPREDGSDVH YADYLEYVIE KEGGIGAFIA 

       250        260        270        280        290        300 
EAVRNTDVQV PSRAYWQRVR EICDKHNVLL IIDDIPNGMG RSGEWFTHQA FGIEPDILCI 

       310        320        330        340        350        360 
GKGLGAGLIP IAALLTKEKY NTAAQVSLGH YTHEKSPLGC AAALATIEVI EQHNLLAKVH 

       370        380        390        400        410        420 
ADSIYMRQRL SQMQQQFSLI GDVRGIGLLW GIELVIDRHT KQRAHDEAEA ILYHCLRHGL 

       430        440        450        460 
SFKVSQGNVI QLSPPLIISR QELDQALDIL YSALLAISQQ MNYSY 

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References

[1]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M66-2 EMBL ACP07525.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001234 Genomic DNA. Translation: ACP07525.1.
RefSeqYP_002812182.1. NC_012580.1.

3D structure databases

ProteinModelPortalC3LVM0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579112.VCM66_A0563.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP07525; ACP07525; VCM66_A0563.
GeneID7781843.
KEGGvcm:VCM66_A0563.
PATRIC20070189. VBIVibCho108967_3103.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK00823.
OMAIDHAHGA.
OrthoDBEOG6QVRHN.
ProtClustDBPRK06082.

Enzyme and pathway databases

BioCycVCHO579112:GJAW-3330-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3LVM0_VIBCM
AccessionPrimary (citable) accession number: C3LVM0
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: April 16, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)