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C3LU56 (C3LU56_VIBCM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.2.1.14 EMBL ACP07011.1
Gene names
Name:chiA-2 EMBL ACP07011.1
Ordered Locus Names:VCM66_A0026 EMBL ACP07011.1
OrganismVibrio cholerae serotype O1 (strain M66-2) [Complete proteome] [HAMAP] EMBL ACP07011.1
Taxonomic identifier579112 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length848 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 18 family. RuleBase RU004453

Sequences

Sequence LengthMass (Da)Tools
C3LU56 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 66BECA294FA58233

FASTA84890,114
        10         20         30         40         50         60 
MNRMTLCAAS IACALASTAM AAPSAPSVDV YGSNNLQFSK IELAMETTAG YNQMVKYHEE 

        70         80         90        100        110        120 
APITLKFNQW SGVTGNTYKI YFDGVEVATG PISGSQTTAQ FTYPKGGVYQ LVIEACDATG 

       130        140        150        160        170        180 
CTKSAPSEIT IADTDGSHLK PLKMNVDPNN KSYTIPQNTV VGTYFVEWSI YDRKFTVDNI 

       190        200        210        220        230        240 
PGQNLTHILY GFIPICGPNE SLKSVGGNSF NALQTACKGV PDFEVVIHDP WAAYQKSFPQ 

       250        260        270        280        290        300 
AGHQYSSPIK GNYAMLMALK KTYPDLKIIP SIGGWTLSDP FFSFTDKAKR DVFVASVKRF 

       310        320        330        340        350        360 
LKTWKFYDGV DIDWEYPGGG GQAADLGDPV KDGPAYVALM AELRAMLDEL EAETGRKYEL 

       370        380        390        400        410        420 
TSAIGVGHDK IEDVNYGQAV QYMDYIFAMT YDFYGGWNNV LGHQTALYCG SFMRPGQCDG 

       430        440        450        460        470        480 
KGVDENGEPY KGPAYTTDNG IQLLLAQGVP PSKLVVGAAM YGRGWEGVTP ASLKDPNDPM 

       490        500        510        520        530        540 
TGVGNGKLKG TTAQGVWEAG VIDYKGVKNF MLGANKTGVN GFEYGYDEQA EAPWVWNRTT 

       550        560        570        580        590        600 
GQLVTFDDDR SVKAKGAYVR NLGLAGLFSW EIDADNGDIL NAMHEGLAGG TTTPPVNKAP 

       610        620        630        640        650        660 
VANAGADITV TGPAAVSLDG SASKDSDGSI ASYLWEQTAG PAVTLTGANS AKASFNAAEV 

       670        680        690        700        710        720 
TEKQTFTFKL TVTDNKGATA TDTVVVTVNP KSTTPVNTAP VAAVSAPASV KAGATVVVDA 

       730        740        750        760        770        780 
SASSDADQDP LSFTWDLPVG INATVQGAKV TFVAGEYSQD TSLSFTVTVS DGKATSTASA 

       790        800        810        820        830        840 
SVLVEKKVGG GDACTNLWNA DAIYTGGQQV TWAGKTWEAK WWTRGEDPSK SGQWGVWKDL 


GAASCSTH 

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References

[1]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M66-2 EMBL ACP07011.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001234 Genomic DNA. Translation: ACP07011.1.
RefSeqYP_002811668.1. NC_012580.1.

3D structure databases

ProteinModelPortalC3LU56.
SMRC3LU56. Positions 22-588.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579112.VCM66_A0026.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP07011; ACP07011; VCM66_A0026.
GeneID7781322.
KEGGvcm:VCM66_A0026.
PATRIC20069168. VBIVibCho108967_2594.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3979.
HOGENOMHOG000272926.
KOK01183.
OMADQGNNDQ.
OrthoDBEOG6V4G7X.
ProtClustDBCLSK869459.

Enzyme and pathway databases

BioCycVCHO579112:GJAW-2808-MONOMER.

Family and domain databases

Gene3D2.10.10.20. 1 hit.
2.60.40.10. 1 hit.
2.60.40.670. 1 hit.
3.20.20.80. 2 hits.
InterProIPR003610. CBM_fam5/12.
IPR011583. Chitinase_II.
IPR013540. ChitinaseA_N.
IPR001223. Glyco_hydro18cat.
IPR001579. Glyco_hydro_18_chit_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR022409. PKD/Chitinase_dom.
IPR002859. PKD/REJ-like.
IPR000601. PKD_dom.
[Graphical view]
PfamPF02839. CBM_5_12. 1 hit.
PF08329. ChitinaseA_N. 1 hit.
PF00704. Glyco_hydro_18. 1 hit.
PF02010. REJ. 1 hit.
[Graphical view]
SMARTSM00495. ChtBD3. 1 hit.
SM00636. Glyco_18. 1 hit.
SM00089. PKD. 3 hits.
[Graphical view]
SUPFAMSSF49299. SSF49299. 2 hits.
SSF51055. SSF51055. 1 hit.
SSF51445. SSF51445. 2 hits.
SSF81296. SSF81296. 1 hit.
PROSITEPS01095. CHITINASE_18. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3LU56_VIBCM
AccessionPrimary (citable) accession number: C3LU56
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: November 13, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)