C3LU56 (C3LU56_VIBCM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Chitinase EMBL ACP07011.1
EC=3.2.1.14 EMBL ACP07011.1

Gene names

Name:	chiA-2 EMBL ACP07011.1
Ordered Locus Names:	VCM66_A0026

Organism

Vibrio cholerae serotype O1 (strain M66-2) [Complete proteome] [HAMAP] EMBL ACP07011.1

Taxonomic identifier

579112 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio › Vibrio cholerae

Protein attributes

Sequence length	848 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 18 family. RuleBase RU004453

Ontologies

Keywords
Molecular function	Glycosidase RuleBase RU000489 EMBL ACP07011.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro chitin catabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	extracellular region Inferred from electronic annotation. Source: InterPro
Molecular_function	carbohydrate binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3LU56 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: 66BECA294FA58233	FASTA	848	90,114
	10 20 30 40 50 60 MNRMTLCAAS IACALASTAM AAPSAPSVDV YGSNNLQFSK IELAMETTAG YNQMVKYHEE 70 80 90 100 110 120 APITLKFNQW SGVTGNTYKI YFDGVEVATG PISGSQTTAQ FTYPKGGVYQ LVIEACDATG 130 140 150 160 170 180 CTKSAPSEIT IADTDGSHLK PLKMNVDPNN KSYTIPQNTV VGTYFVEWSI YDRKFTVDNI 190 200 210 220 230 240 PGQNLTHILY GFIPICGPNE SLKSVGGNSF NALQTACKGV PDFEVVIHDP WAAYQKSFPQ 250 260 270 280 290 300 AGHQYSSPIK GNYAMLMALK KTYPDLKIIP SIGGWTLSDP FFSFTDKAKR DVFVASVKRF 310 320 330 340 350 360 LKTWKFYDGV DIDWEYPGGG GQAADLGDPV KDGPAYVALM AELRAMLDEL EAETGRKYEL 370 380 390 400 410 420 TSAIGVGHDK IEDVNYGQAV QYMDYIFAMT YDFYGGWNNV LGHQTALYCG SFMRPGQCDG 430 440 450 460 470 480 KGVDENGEPY KGPAYTTDNG IQLLLAQGVP PSKLVVGAAM YGRGWEGVTP ASLKDPNDPM 490 500 510 520 530 540 TGVGNGKLKG TTAQGVWEAG VIDYKGVKNF MLGANKTGVN GFEYGYDEQA EAPWVWNRTT 550 560 570 580 590 600 GQLVTFDDDR SVKAKGAYVR NLGLAGLFSW EIDADNGDIL NAMHEGLAGG TTTPPVNKAP 610 620 630 640 650 660 VANAGADITV TGPAAVSLDG SASKDSDGSI ASYLWEQTAG PAVTLTGANS AKASFNAAEV 670 680 690 700 710 720 TEKQTFTFKL TVTDNKGATA TDTVVVTVNP KSTTPVNTAP VAAVSAPASV KAGATVVVDA 730 740 750 760 770 780 SASSDADQDP LSFTWDLPVG INATVQGAKV TFVAGEYSQD TSLSFTVTVS DGKATSTASA 790 800 810 820 830 840 SVLVEKKVGG GDACTNLWNA DAIYTGGQQV TWAGKTWEAK WWTRGEDPSK SGQWGVWKDL GAASCSTH

References

[1]

"A recalibrated molecular clock and independent origins for the cholera pandemic clones." Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L. PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: M66-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001234 Genomic DNA. Translation: ACP07011.1.
RefSeq	YP_002811668.1. NC_012580.1.
3D structure databases
ProteinModelPortal	C3LU56.
SMR	C3LU56. Positions 22-588.
ModBase	Search...
Protein-protein interaction databases
STRING	579112.VCM66_A0026.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACP07011; ACP07011; VCM66_A0026.
GeneID	7781322.
KEGG	vcm:VCM66_A0026.
PATRIC	20069168. VBIVibCho108967_2594.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3979.
HOGENOM	HOG000272926.
KO	K01183.
OMA	WEDGVID.
ProtClustDB	CLSK869459.
Enzyme and pathway databases
BioCyc	VCHO579112:GJAW-2808-MONOMER.
Family and domain databases
Gene3D	2.10.10.20. 1 hit. 2.60.40.10. 1 hit. 2.60.40.670. 1 hit. 3.20.20.80. 2 hits.
InterPro	IPR003610. CBM_fam5/12. IPR011583. Chitinase_II. IPR013540. ChitinaseA_N. IPR001223. Glyco_hydro18cat. IPR001579. Glyco_hydro_18_chit_AS. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. IPR022409. PKD/Chitinase_dom. IPR002859. PKD/REJ-like. IPR000601. PKD_dom. [Graphical view]
Pfam	PF02839. CBM_5_12. 1 hit. PF08329. ChitinaseA_N. 1 hit. PF00704. Glyco_hydro_18. 1 hit. PF02010. REJ. 1 hit. [Graphical view]
SMART	SM00495. ChtBD3. 1 hit. SM00636. Glyco_18. 1 hit. SM00089. PKD. 3 hits. [Graphical view]
SUPFAM	SSF51055. CBM_5_12. 1 hit. SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit. SSF49299. PKD. 2 hits.
PROSITE	PS01095. CHITINASE_18. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3LU56_VIBCM

Accession

Primary (citable) accession number: C3LU56

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 29, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)