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C3LNA3 (C3LNA3_VIBCM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.2.1.18 EMBL ACP06029.1
Gene names
Name:nanH EMBL ACP06029.1
Ordered Locus Names:VCM66_1722 EMBL ACP06029.1
OrganismVibrio cholerae serotype O1 (strain M66-2) [Complete proteome] [HAMAP] EMBL ACP06029.1
Taxonomic identifier579112 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length807 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C3LNA3 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: CE720E23598F9DCC

FASTA80788,581
        10         20         30         40         50         60 
MSIKMTSQRR RASIHKETDS NIKGVDMRFK NVKKTALMLA MFGMATSSNA ALFDYNATGD 

        70         80         90        100        110        120 
TEFDSPAKQG WMQDNTNNGS GVLTNADGMP AWLVQGIGGR AQWTYSLSTN QHAQASSFGW 

       130        140        150        160        170        180 
RMTTEMKVLS GGMITNYYAN GTQRVLPIIS LDSSGNLVVE FEGQTGRTVL ATGTAATEYH 

       190        200        210        220        230        240 
KFELVFLPGS NPSASFYFDG KLIRDNIQPT ASKQNMIVWG NGSSNTDGVA AYRDIKFEIQ 

       250        260        270        280        290        300 
GDVIFRGPDR IPSIVASSVT PGVVTAFAEK RVGGGDPGAL SNTNDIITRT SRDGGITWDT 

       310        320        330        340        350        360 
ELNLTEQINV SDEFDFSDPR PIYDPSSNTV LVSYARWPTD AAQNGDRIKP WMPNGIFYSV 

       370        380        390        400        410        420 
YDVASGNWQA PIDVTDQVKE RSFQIAGWGG SELYRRNTSL NSQQDWQSNA KIRIVDGAAN 

       430        440        450        460        470        480 
QIQVADGSRK YVVTLSIDES GGLVANLNGV SAPIILQSEH AKVHSFHDYE LQYSALNHTT 

       490        500        510        520        530        540 
TLFVDGQQIT TWAGEVSQEN NIQFGNADAQ IDGRLHVQKI VLTQQGHNLV EFDAFYLAQQ 

       550        560        570        580        590        600 
TPEVEKDLEK LGWTKIKTGN TMSLYGNASV NPGPGHGITL TRQQNISGSQ NGRLIYPAIV 

       610        620        630        640        650        660 
LDRFFLNVMS IYSDDGGSNW QTGSTLPIPF RWKSSSILET LEPSEADMVE LQNGDLLLTA 

       670        680        690        700        710        720 
RLDFNQIVNG VNYSPRQQFL SKDGGITWSL LEANNANVFS NISTGTVDAS ITRFEQSDGS 

       730        740        750        760        770        780 
HFLLFTNPQG NPAGTNGRQN LGLWFSFDEG VTWKGPIQLV NGASAYSDIY QLDSENAIVI 

       790        800 
VETDNSNMRI LRMPITLLKQ KLTLSQN 

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References

[1]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M66-2 EMBL ACP06029.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001233 Genomic DNA. Translation: ACP06029.1.
RefSeqYP_002810480.1. NC_012578.1.

3D structure databases

ProteinModelPortalC3LNA3.
SMRC3LNA3. Positions 51-807.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579112.VCM66_1722.

Chemistry

BindingDBC3LNA3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP06029; ACP06029; VCM66_1722.
GeneID7772990.
KEGGvcm:VCM66_1722.
PATRIC20067186. VBIVibCho108967_1640.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4409.
HOGENOMHOG000218204.
KOK01186.
OrthoDBEOG64JFJ7.
ProtClustDBCLSK794375.

Enzyme and pathway databases

BioCycVCHO579112:GJAW-1785-MONOMER.

Family and domain databases

Gene3D2.120.10.10. 2 hits.
2.60.120.200. 2 hits.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
IPR015344. VCNA_lectin-like_dom.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PfamPF09264. Sial-lect-inser. 2 hits.
[Graphical view]
SUPFAMSSF49899. SSF49899. 2 hits.
SSF50939. SSF50939. 2 hits.
ProtoNetSearch...

Entry information

Entry nameC3LNA3_VIBCM
AccessionPrimary (citable) accession number: C3LNA3
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: February 19, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)