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C3LN49 (GLGA_VIBCM) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycogen synthase

EC=2.4.1.21
Alternative name(s):
Starch [bacterial glycogen] synthase
Gene names
Name:glgA
Ordered Locus Names:VCM66_1666
OrganismVibrio cholerae serotype O1 (strain M66-2) [Complete proteome] [HAMAP]
Taxonomic identifier579112 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length484 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity. HAMAP-Rule MF_00484

Catalytic activity

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP-Rule MF_00484

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00484

Sequence similarities

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Ontologies

Keywords
   Biological processGlycogen biosynthesis
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglycogen biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionstarch synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 484484Glycogen synthase HAMAP-Rule MF_00484
PRO_1000190091

Sites

Binding site181ADP-glucose By similarity

Sequences

Sequence LengthMass (Da)Tools
C3LN49 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 776D1D3E6BCC0920

FASTA48455,067
        10         20         30         40         50         60 
MEQFNVWFTV SEVQGLVKSG GLADVAKALP QALKALHQQV AIALPAYRSV PGKEDAELVL 

        70         80         90        100        110        120 
ETELTHWPHT QYRVLKRDLD GVPIYLIDCP AYFDRPALYA ENNQAYADNG ERFGFFSAAC 

       130        140        150        160        170        180 
LDVLPKLGIQ PDIIHANDWH TGLVPFLLKT RYRYDSFFEQ VKSVLTVHNA IFKGIFSYHQ 

       190        200        210        220        230        240 
LEVIPELNLS GMEFLQYGHD HVSMLRAGIA FADKVNAVSP NYAAELLTPL GAHGLVDDFV 

       250        260        270        280        290        300 
RRARDLHGIV NGCDYSEWNP RTDHYLPATY SDEPESMRKG KALCKTALQE ELHLPVTDVP 

       310        320        330        340        350        360 
LFGMVCRLTH QKGFHYLLPI LEQFLRNNVQ VVIVGTGEPE VAARLNKIAH YHRAKFAFVE 

       370        380        390        400        410        420 
TYSERLAHWV EAGSDFFLMP SEFEACGLNQ IYSMAYGTLP IVREVGGLKD TVNDYDKFPE 

       430        440        450        460        470        480 
RATGFGYQEP TPEALLITMQ RALLFYLQQP EEMLKVQQRA MQQNFSWEES AQEYMKMYRL 


ARFG 

« Hide

References

[1]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M66-2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001233 Genomic DNA. Translation: ACP05975.1.
RefSeqYP_002810426.1. NC_012578.1.

3D structure databases

ProteinModelPortalC3LN49.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579112.VCM66_1666.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP05975; ACP05975; VCM66_1666.
GeneID7772936.
KEGGvcm:VCM66_1666.
PATRIC20067084. VBIVibCho108967_1590.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0297.
HOGENOMHOG000294940.
KOK00703.
OMAHIGYDEP.
OrthoDBEOG6JTC6Z.

Enzyme and pathway databases

BioCycVCHO579112:GJAW-1729-MONOMER.
UniPathwayUPA00164.

Family and domain databases

HAMAPMF_00484. Glycogen_synth.
InterProIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR02095. glgA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGA_VIBCM
AccessionPrimary (citable) accession number: C3LN49
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: June 16, 2009
Last modified: May 14, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways