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C3LM07 (C3LM07_VIBCM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length428 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site951Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site3201Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1941Substrate By similarity HAMAP-Rule MF_01201
Binding site3681Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue951N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
C3LM07 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 2FD8D39D89537530

FASTA42846,407
        10         20         30         40         50         60 
MEQPLLSRKK NVPSMITTGD IMHFKATLLS LSIAATLPSF SLSAAPLHID TALPDAAQIQ 

        70         80         90        100        110        120 
QSNSWLEISL GQFQSNIEQF KSHMNANTKI CAIMKADAYG NGIRGLMPTI IAQGIPCVGV 

       130        140        150        160        170        180 
ASNAEARAVR ESGFKGELIR VRSASLSEMS SALDLNIEEL IGTHQQALDL AELAKQSGKT 

       190        200        210        220        230        240 
LKVHIALNDG GMGRNGIDMT TEAGKKEAVS IATQPSLSVV GIMTHFPNYN ADEVRAKLAQ 

       250        260        270        280        290        300 
FKESSTWLMQ QANLKREEIT LHVANSYTAL NVPEAQLDMV RPGGVLFGDL PTNPEYPSIV 

       310        320        330        340        350        360 
SFKTRVSSLH HLPKDSTVGY DSTFTTSRDS VLANLPVGYS DGYPRKMGNK AEVLINGQRA 

       370        380        390        400        410        420 
KVVGVTSMNT TVVDVTEIKG VLPGQEVVLF GQQQKQSIAV SEMENNAELI FPELYTLWGT 


SNPRFYVK 

« Hide

References

[1]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M66-2 EMBL ACP05583.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001233 Genomic DNA. Translation: ACP05583.1.
RefSeqYP_002810034.1. NC_012578.1.

3D structure databases

ProteinModelPortalC3LM07.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING579112.VCM66_1267.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACP05583; ACP05583; VCM66_1267.
GeneID7772544.
KEGGvcm:VCM66_1267.
PATRIC20066317. VBIVibCho108967_1209.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000279190.
KOK01775.
OMAADLYTVW.
OrthoDBEOG6PP9NJ.
ProtClustDBPRK13340.

Enzyme and pathway databases

BioCycVCHO579112:GJAW-1333-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC3LM07_VIBCM
AccessionPrimary (citable) accession number: C3LM07
Entry history
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: February 19, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)