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C3KAZ9

- C3KAZ9_PSEFS

UniProt

C3KAZ9 - C3KAZ9_PSEFS

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

PFLU_2911

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (16 Jun 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:PFLU_2911Imported
    OrganismiPseudomonas fluorescens (strain SBW25)Imported
    Taxonomic identifieri216595 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002332: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi216595.PFLU2911.

    Structurei

    3D structure databases

    ProteinModelPortaliC3KAZ9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C3KAZ9-1 [UniParc]FASTAAdd to Basket

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    MPKPLSEYNR KRDFGVTGEP AGRAPAGKRN ASALSFVIQK HDARNLHYDF    50
    RLELDGVLLS WAVPKGPSLD PSQKRLAVHV EDHPLSYGSF EGSIPAGQYG 100
    AGDVIVWDRG IWQPHDDPRK AYAAGKLTFT LVGEKLSGDW ALVRTRLKGS 150
    GDKEQWLLIK EKDAQARPAD DYDIVQAQPD SVVSDASAGK SNVKYNVKYN 200
    VKYNAKPSTK ATRQQAAATA LPEQFNPQLA TLVDRAPEGD WQYEIKFDGY 250
    RMLTRIRDGE VRLFTRNGHD WTERLPRQVK ALQALKLKDS WLDGEVVSLN 300
    GDGLPDFQAL QNAFDIGRSL DIVYYLFDAP FLNGQDQRQA PVEARRAALK 350
    DALAVSRSKL LRFSEAFTAH PRDIFESACD LALEGVIGKR LGSPYVSSRS 400
    ADWIKLKCRL RQEFVIVGYT RPQGSRSGFG ALLLAVNDDA GLVYAGRVGT 450
    GFDHASLKAI YAQLKPLERK TSPLEKPLSS AQARGVHWVE PTLVGEVQFA 500
    EWTREGVVRQ AAFVGLRSDK PAAEIIHELP RTANAMKPAK KTSAAVTITH 550
    PDRVIDPQSG TRKQQLAQFY DSISQWILPF LRHRPVSLLR APEGIEGEPF 600
    FQKHSERLAI PNIKHLDQAL DPGHARLMEI DSTRALIGAV QMGAVEFHTW 650
    GATSDKIETP DLFVLDLDPD PALPWKAMLE AAQLTLSVLD ELGLQAFVKT 700
    SGGKGLHLVV PLARRDGWDT VKAFAKAIAQ FMTEQLPERF TATSGPKNRV 750
    GKIFIDYLRN ARGASTVAAY SVRARPGLPV SVPISREELK GLRSAQQWTV 800
    ANVQQRLNGL KADPWAGYTN RQKLSQKMWD KLGARPPV 838
    Length:838
    Mass (Da):92,892
    Last modified:June 16, 2009 - v1
    Checksum:iB50C7702D56DA6C7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM181176 Genomic DNA. Translation: CAY49138.1.
    RefSeqiWP_012724092.1. NC_012660.1.
    YP_002872489.1. NC_012660.1.

    Genome annotation databases

    EnsemblBacteriaiCAY49138; CAY49138; PFLU_2911.
    GeneIDi7818267.
    KEGGipfs:PFLU2911.
    PATRICi19899974. VBIPseFlu98510_3090.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM181176 Genomic DNA. Translation: CAY49138.1 .
    RefSeqi WP_012724092.1. NC_012660.1.
    YP_002872489.1. NC_012660.1.

    3D structure databases

    ProteinModelPortali C3KAZ9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 216595.PFLU2911.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAY49138 ; CAY49138 ; PFLU_2911 .
    GeneIDi 7818267.
    KEGGi pfs:PFLU2911.
    PATRICi 19899974. VBIPseFlu98510_3090.

    Phylogenomic databases

    eggNOGi COG3285.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SBW25Imported.

    Entry informationi

    Entry nameiC3KAZ9_PSEFS
    AccessioniPrimary (citable) accession number: C3KAZ9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 16, 2009
    Last sequence update: June 16, 2009
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3