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C3KAZ9

- C3KAZ9_PSEFS

UniProt

C3KAZ9 - C3KAZ9_PSEFS

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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

PFLU_2911

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PFLU_2911Imported
OrganismiPseudomonas fluorescens (strain SBW25)Imported
Taxonomic identifieri216595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002332: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi216595.PFLU2911.

Structurei

3D structure databases

ProteinModelPortaliC3KAZ9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3KAZ9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKPLSEYNR KRDFGVTGEP AGRAPAGKRN ASALSFVIQK HDARNLHYDF
60 70 80 90 100
RLELDGVLLS WAVPKGPSLD PSQKRLAVHV EDHPLSYGSF EGSIPAGQYG
110 120 130 140 150
AGDVIVWDRG IWQPHDDPRK AYAAGKLTFT LVGEKLSGDW ALVRTRLKGS
160 170 180 190 200
GDKEQWLLIK EKDAQARPAD DYDIVQAQPD SVVSDASAGK SNVKYNVKYN
210 220 230 240 250
VKYNAKPSTK ATRQQAAATA LPEQFNPQLA TLVDRAPEGD WQYEIKFDGY
260 270 280 290 300
RMLTRIRDGE VRLFTRNGHD WTERLPRQVK ALQALKLKDS WLDGEVVSLN
310 320 330 340 350
GDGLPDFQAL QNAFDIGRSL DIVYYLFDAP FLNGQDQRQA PVEARRAALK
360 370 380 390 400
DALAVSRSKL LRFSEAFTAH PRDIFESACD LALEGVIGKR LGSPYVSSRS
410 420 430 440 450
ADWIKLKCRL RQEFVIVGYT RPQGSRSGFG ALLLAVNDDA GLVYAGRVGT
460 470 480 490 500
GFDHASLKAI YAQLKPLERK TSPLEKPLSS AQARGVHWVE PTLVGEVQFA
510 520 530 540 550
EWTREGVVRQ AAFVGLRSDK PAAEIIHELP RTANAMKPAK KTSAAVTITH
560 570 580 590 600
PDRVIDPQSG TRKQQLAQFY DSISQWILPF LRHRPVSLLR APEGIEGEPF
610 620 630 640 650
FQKHSERLAI PNIKHLDQAL DPGHARLMEI DSTRALIGAV QMGAVEFHTW
660 670 680 690 700
GATSDKIETP DLFVLDLDPD PALPWKAMLE AAQLTLSVLD ELGLQAFVKT
710 720 730 740 750
SGGKGLHLVV PLARRDGWDT VKAFAKAIAQ FMTEQLPERF TATSGPKNRV
760 770 780 790 800
GKIFIDYLRN ARGASTVAAY SVRARPGLPV SVPISREELK GLRSAQQWTV
810 820 830
ANVQQRLNGL KADPWAGYTN RQKLSQKMWD KLGARPPV
Length:838
Mass (Da):92,892
Last modified:June 16, 2009 - v1
Checksum:iB50C7702D56DA6C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM181176 Genomic DNA. Translation: CAY49138.1.
RefSeqiWP_012724092.1. NC_012660.1.
YP_002872489.1. NC_012660.1.

Genome annotation databases

EnsemblBacteriaiCAY49138; CAY49138; PFLU_2911.
GeneIDi7818267.
KEGGipfs:PFLU2911.
PATRICi19899974. VBIPseFlu98510_3090.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM181176 Genomic DNA. Translation: CAY49138.1 .
RefSeqi WP_012724092.1. NC_012660.1.
YP_002872489.1. NC_012660.1.

3D structure databases

ProteinModelPortali C3KAZ9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 216595.PFLU2911.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAY49138 ; CAY49138 ; PFLU_2911 .
GeneIDi 7818267.
KEGGi pfs:PFLU2911.
PATRICi 19899974. VBIPseFlu98510_3090.

Phylogenomic databases

eggNOGi COG3285.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBW25Imported.

Entry informationi

Entry nameiC3KAZ9_PSEFS
AccessioniPrimary (citable) accession number: C3KAZ9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 16, 2009
Last sequence update: June 16, 2009
Last modified: October 1, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3