C3KAZ9 (C3KAZ9_PSEFS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL CAY49138.1

Gene names

Ordered Locus Names:

PFLU_2911 EMBL CAY49138.1

Organism

Pseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAY49138.1

Taxonomic identifier

216595 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	838 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAY49138.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3KAZ9 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: B50C7702D56DA6C7	FASTA	838	92,892
	10 20 30 40 50 60 MPKPLSEYNR KRDFGVTGEP AGRAPAGKRN ASALSFVIQK HDARNLHYDF RLELDGVLLS 70 80 90 100 110 120 WAVPKGPSLD PSQKRLAVHV EDHPLSYGSF EGSIPAGQYG AGDVIVWDRG IWQPHDDPRK 130 140 150 160 170 180 AYAAGKLTFT LVGEKLSGDW ALVRTRLKGS GDKEQWLLIK EKDAQARPAD DYDIVQAQPD 190 200 210 220 230 240 SVVSDASAGK SNVKYNVKYN VKYNAKPSTK ATRQQAAATA LPEQFNPQLA TLVDRAPEGD 250 260 270 280 290 300 WQYEIKFDGY RMLTRIRDGE VRLFTRNGHD WTERLPRQVK ALQALKLKDS WLDGEVVSLN 310 320 330 340 350 360 GDGLPDFQAL QNAFDIGRSL DIVYYLFDAP FLNGQDQRQA PVEARRAALK DALAVSRSKL 370 380 390 400 410 420 LRFSEAFTAH PRDIFESACD LALEGVIGKR LGSPYVSSRS ADWIKLKCRL RQEFVIVGYT 430 440 450 460 470 480 RPQGSRSGFG ALLLAVNDDA GLVYAGRVGT GFDHASLKAI YAQLKPLERK TSPLEKPLSS 490 500 510 520 530 540 AQARGVHWVE PTLVGEVQFA EWTREGVVRQ AAFVGLRSDK PAAEIIHELP RTANAMKPAK 550 560 570 580 590 600 KTSAAVTITH PDRVIDPQSG TRKQQLAQFY DSISQWILPF LRHRPVSLLR APEGIEGEPF 610 620 630 640 650 660 FQKHSERLAI PNIKHLDQAL DPGHARLMEI DSTRALIGAV QMGAVEFHTW GATSDKIETP 670 680 690 700 710 720 DLFVLDLDPD PALPWKAMLE AAQLTLSVLD ELGLQAFVKT SGGKGLHLVV PLARRDGWDT 730 740 750 760 770 780 VKAFAKAIAQ FMTEQLPERF TATSGPKNRV GKIFIDYLRN ARGASTVAAY SVRARPGLPV 790 800 810 820 830 SVPISREELK GLRSAQQWTV ANVQQRLNGL KADPWAGYTN RQKLSQKMWD KLGARPPV

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SBW25 EMBL CAY49138.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM181176 Genomic DNA. Translation: CAY49138.1.
RefSeq	YP_002872489.1. NC_012660.1.
3D structure databases
ProteinModelPortal	C3KAZ9.
ModBase	Search...
Protein-protein interaction databases
STRING	216595.PFLU2911.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAY49138; CAY49138; PFLU_2911.
GeneID	7818267.
KEGG	pfs:PFLU2911.
PATRIC	19899974. VBIPseFlu98510_3090.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
KO	K01971.
OMA	DWTIRSI.
ProtClustDB	PRK05972.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3KAZ9_PSEFS

Accession

Primary (citable) accession number: C3KAZ9

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)