Putative ATP-dependent DNA ligase - Pseudomonas fluorescens (strain SBW25)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL CAY47568.1

Gene names

Ordered Locus Names:

PFLU_1312 EMBL CAY47568.1

Organism

Pseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAY47568.1

Taxonomic identifier

216595 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length	544 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL CAY47568.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

C3K7I7 [UniParc].

Last modified June 16, 2009. Version 1.
Checksum: 3C54542ECD9C2746
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FASTA

544

60,683

        10         20         30         40         50         60 
MKAFAELYAN LDATTSSNAK LAALQAYFRH AAPEDAAWAV YFLSGGRPRQ LVPTRLLRDM 

        70         80         90        100        110        120 
ATEASGIEPW LFEESYQSVG DLAETISLLL PESPYTSEDG LAVWLEEKLL PLRGLPPLDL 

       130        140        150        160        170        180 
AARLPALWAQ LDQPSLMVCI KLITGSFRVG VSKLLVTRAL AAMAELDSKR VAQRLVGYTD 

       190        200        210        220        230        240 
LSNRPTPEGY LKLIAPESSD EHAQRGGQPY PFFLAHGLAQ PVEQFDTLLG SPADWQVEWK 

       250        260        270        280        290        300 
WDGIRAQLVK RDGRLWIWSR GEELVTERFP ELHSLVSGLP DGTVIDGEIV VWKDAVQPFA 

       310        320        330        340        350        360 
QLQQRIGRKT LSKKVLEDAP VAVLAYDLLE HQGDDWRNHT QAERRAQLEQ VIAGCNQPVL 

       370        380        390        400        410        420 
LASPLLTANS WQDLAEQREA SRSLGVEGMM LKARDGLYGV GRTKDMGVWW KWKVDPFSVD 

       430        440        450        460        470        480 
AVLIYAQRGH GRRASLYSDY TFAVWDGPSG SERTLVPFAK AYSGLTDEEM RKVDAIVRKT 

       490        500        510        520        530        540 
TVEKFGPVSS VTPSMVFELG FEGIALSKRH KSGIAVRFPR MLRWRQDKSV EDADNLATLQ 


DLLT

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References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens."
Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D.

Thomson N.R.
Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SBW25 EMBL CAY47568.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM181176 Genomic DNA. Translation: CAY47568.1.
RefSeq	YP_002870963.1. NC_012660.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	216595.PFLU1312.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAY47568; CAY47568; PFLU_1312.
GeneID	7819910.
KEGG	pfs:PFLU1312.
PATRIC	19896850. VBIPseFlu98510_1543.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3K7I7_PSEFS

Accession

Primary (citable) accession number: C3K7I7

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Family and domain databases

Entry information