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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

PFLU_1312

Organism
Pseudomonas fluorescens (strain SBW25)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PFLU_1312Imported
OrganismiPseudomonas fluorescens (strain SBW25)Imported
Taxonomic identifieri216595 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002332 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi216595.PFLU1312.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C3K7I7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAELYAN LDATTSSNAK LAALQAYFRH AAPEDAAWAV YFLSGGRPRQ
60 70 80 90 100
LVPTRLLRDM ATEASGIEPW LFEESYQSVG DLAETISLLL PESPYTSEDG
110 120 130 140 150
LAVWLEEKLL PLRGLPPLDL AARLPALWAQ LDQPSLMVCI KLITGSFRVG
160 170 180 190 200
VSKLLVTRAL AAMAELDSKR VAQRLVGYTD LSNRPTPEGY LKLIAPESSD
210 220 230 240 250
EHAQRGGQPY PFFLAHGLAQ PVEQFDTLLG SPADWQVEWK WDGIRAQLVK
260 270 280 290 300
RDGRLWIWSR GEELVTERFP ELHSLVSGLP DGTVIDGEIV VWKDAVQPFA
310 320 330 340 350
QLQQRIGRKT LSKKVLEDAP VAVLAYDLLE HQGDDWRNHT QAERRAQLEQ
360 370 380 390 400
VIAGCNQPVL LASPLLTANS WQDLAEQREA SRSLGVEGMM LKARDGLYGV
410 420 430 440 450
GRTKDMGVWW KWKVDPFSVD AVLIYAQRGH GRRASLYSDY TFAVWDGPSG
460 470 480 490 500
SERTLVPFAK AYSGLTDEEM RKVDAIVRKT TVEKFGPVSS VTPSMVFELG
510 520 530 540
FEGIALSKRH KSGIAVRFPR MLRWRQDKSV EDADNLATLQ DLLT
Length:544
Mass (Da):60,683
Last modified:June 15, 2009 - v1
Checksum:i3C54542ECD9C2746
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM181176 Genomic DNA. Translation: CAY47568.1.
RefSeqiWP_012722626.1. NC_012660.1.
YP_002870963.1. NC_012660.1.

Genome annotation databases

EnsemblBacteriaiCAY47568; CAY47568; PFLU_1312.
GeneIDi7819910.
KEGGipfs:PFLU1312.
PATRICi19896850. VBIPseFlu98510_1543.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM181176 Genomic DNA. Translation: CAY47568.1.
RefSeqiWP_012722626.1. NC_012660.1.
YP_002870963.1. NC_012660.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi216595.PFLU1312.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAY47568; CAY47568; PFLU_1312.
GeneIDi7819910.
KEGGipfs:PFLU1312.
PATRICi19896850. VBIPseFlu98510_1543.

Phylogenomic databases

eggNOGiCOG1793.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBW25Imported.

Entry informationi

Entry nameiC3K7I7_PSEFS
AccessioniPrimary (citable) accession number: C3K7I7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2009
Last sequence update: June 15, 2009
Last modified: March 3, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.