C3K708 (C3K708_PSEFS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	rpoS EMBL CAY47558.1
Ordered Locus Names:	PFLU_1302 EMBL CAY47558.1

Organism

Pseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAY47558.1

Taxonomic identifier

216595 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	334 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627 RuleBase RU000715
Molecular function	Sigma factor SAAS SAAS007627 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3K708 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: 279944C0FC0693CD	FASTA	334	38,089
	10 20 30 40 50 60 MALSKEAPEF DIDDEVLLME TGIATESMSN EGPAVPSVRA KSKNSTALKQ HKYIDYTRAL 70 80 90 100 110 120 DATQLYLNEI GFSPLLTPEE EVHFARLSQK GDPAGRKRMI ESNLRLVVKI ARRYVNRGLS 130 140 150 160 170 180 LLDLIEEGNL GLIRAVEKFD PERGFRFSTY ATWWIRQTIE RAIMNQTRTI RLPIHVVKEL 190 200 210 220 230 240 NVYLRAAREL TQKLDHEPSP EEIANLLEKP VAEVKRMLGL NERVSSVDVS LGPDSDKTLL 250 260 270 280 290 300 DTLTDDRPTD PCELLQDDDL SQSIDQWLSE LTDKQREVVI RRFGLRGHES STLEDVGLEI 310 320 330 GLTRERVRQI QVEGLKRLRE ILEKNGLSSE SLFQ

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SBW25 EMBL CAY47558.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM181176 Genomic DNA. Translation: CAY47558.1.
RefSeq	YP_002870953.1. NC_012660.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	216595.PFLU1302.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAY47558; CAY47558; PFLU_1302.
GeneID	7820454.
KEGG	pfs:PFLU1302.
PATRIC	19896830. VBIPseFlu98510_1533.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
KO	K03087.
OMA	KWLDELN.
ProtClustDB	PRK05657.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012761. RNA_pol_sigma_RpoS_proteobac. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02394. rpoS_proteo. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3K708_PSEFS

Accession

Primary (citable) accession number: C3K708

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)