C3K2X0 (C3K2X0_PSEFS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S3 HAMAP-Rule MF_01309

Gene names

Name:	rpsC HAMAP-Rule MF_01309 EMBL CAY52756.1
Ordered Locus Names:	PFLU_5521 EMBL CAY52756.1

Organism

Pseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAY52756.1

Taxonomic identifier

216595 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	228 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation By similarity. HAMAP-Rule MF_01309
Subunit structure	Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14 By similarity. HAMAP-Rule MF_01309
Sequence similarities	Belongs to the ribosomal protein S3P family. HAMAP-Rule MF_01309 RuleBase RU003624 Contains 1 KH type-2 domain. HAMAP-Rule MF_01309

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01309
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01309 RuleBase RU003624 EMBL CAY52756.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	mRNA binding Inferred from electronic annotation. Source: HAMAP rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	39 – 107	69	KH type-2 By similarity HAMAP-Rule MF_01309

Sequences

	Sequence		Length	Mass (Da)
	C3K2X0 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: B4AB2A21F4FD30B4	FASTA	228	25,753
	10 20 30 40 50 60 MGQKVHPIGI RLGIVKEHTS VWYADGRTYA DYLFADLKVR EYLQDKLKSA SVSRIDIHRP 70 80 90 100 110 120 AQTARITIHT ARPGIVIGKK GEDVEKLRQD LTKQMGVPVH INIEEIRKPE LDGMLVAQSV 130 140 150 160 170 180 AQQLERRVMF RRAMKRAVQN AMRIGAKGIK IQVSGRLGGA EIARTEWYRE GRVPLHTLRA 190 200 210 220 DIDYANYEAH TTYGVIGVKV WIFKGEVIGG RQEELKPQAP APRKKAAK

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SBW25 EMBL CAY52756.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM181176 Genomic DNA. Translation: CAY52756.1.
RefSeq	YP_002875016.1. NC_012660.1.
3D structure databases
ProteinModelPortal	C3K2X0.
SMR	C3K2X0. Positions 2-207.
ModBase	Search...
Protein-protein interaction databases
STRING	216595.PFLU5521. C3K2X0.
Proteomic databases
PRIDE	C3K2X0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAY52756; CAY52756; PFLU_5521.
GeneID	7820360.
KEGG	pfs:PFLU5521.
PATRIC	19905146. VBIPseFlu98510_5645.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0092.
KO	K02982.
OMA	MGQKTNP.
ProtClustDB	PRK00310.
Family and domain databases
Gene3D	3.30.1140.32. 1 hit. 3.30.300.20. 1 hit.
HAMAP	MF_01309_B. Ribosomal_S3_B.
InterPro	IPR004087. KH_dom. IPR015946. KH_dom-like_a/b. IPR004088. KH_dom_type_1. IPR004044. KH_dom_type_2. IPR009019. KH_prok-type. IPR005704. Ribosomal_S3_bac. IPR001351. Ribosomal_S3_C. IPR018280. Ribosomal_S3_CS. [Graphical view]
Pfam	PF07650. KH_2. 1 hit. PF00189. Ribosomal_S3_C. 1 hit. [Graphical view]
SMART	SM00322. KH. 1 hit. [Graphical view]
SUPFAM	SSF54814. KH_prok. 1 hit. SSF54821. Ribosomal_S3_C. 1 hit.
TIGRFAMs	TIGR01009. rpsC_bact. 1 hit.
PROSITE	PS50084. KH_TYPE_1. 1 hit. PS50823. KH_TYPE_2. 1 hit. PS00548. RIBOSOMAL_S3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3K2X0_PSEFS

Accession

Primary (citable) accession number: C3K2X0

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)