C3K0D6 (C3K0D6_PSEFS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

PFLU_4372 EMBL CAY50999.1

Organism

Pseudomonas fluorescens (strain SBW25) [Complete proteome] [HAMAP] EMBL CAY50999.1

Taxonomic identifier

216595 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas fluorescens

Protein attributes

Sequence length	211 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 Lyase EMBL CAY50999.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C3K0D6 [UniParc]. Last modified June 16, 2009. Version 1. Checksum: 055B7387DB2F7014	FASTA	211	24,047
	10 20 30 40 50 60 MPLSNIHILY QDAAVLVVNK PTLLLSVPGR ADDNKDCLIT RLQENGYPEA RIVHRLDWET 70 80 90 100 110 120 SGIILLARDA DTHRELSRQF HDRETEKAYT ALAWGQPELD SGSIDLPLRY DPPTKPRHVV 130 140 150 160 170 180 DHEFGKHALT FWKVLERCGD WCRVELTPIT GRSHQLRVHM LSIGHPLLGD GLYAHEQALA 190 200 210 AWPRLCLHAS MLSFTHPQSG ERLRFECPAP F

References

[1]

"Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens." Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., Gehrig S.M., Godfrey S.A., Knight C.G., Malone J.G., Robinson Z., Spiers A.J., Harris S., Challis G.L., Yaxley A.M., Harris D. , Seeger K., Murphy L., Rutter S., Squares R., Quail M.A., Saunders E., Mavromatis K., Brettin T.S., Bentley S.D., Hothersall J., Stephens E., Thomas C.M., Parkhill J., Levy S.B., Rainey P.B., Thomson N.R. Genome Biol. 10:R51-R51(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SBW25 EMBL CAY50999.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM181176 Genomic DNA. Translation: CAY50999.1.
RefSeq	YP_002873907.1. NC_012660.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	216595.PFLU4372.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAY50999; CAY50999; PFLU_4372.
GeneID	7818738.
KEGG	pfs:PFLU4372.
PATRIC	19902858. VBIPseFlu98510_4516.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
KO	K06177.
OMA	IDLPLRY.
ProtClustDB	CLSK867848.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3K0D6_PSEFS

Accession

Primary (citable) accession number: C3K0D6

Entry history

Integrated into UniProtKB/TrEMBL:	June 16, 2009
Last sequence update:	June 16, 2009
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)