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Protein

Uncharacterized membrane protein YkgR

Gene

ykgR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Biological processi

Stress response

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2881.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized membrane protein YkgR
Gene namesi
Name:ykgR
Ordered Locus Names:b4671, JW5035.1
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14476. ykgR.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1212Cytoplasmic1 PublicationAdd
BLAST
Transmembranei13 – 3321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 3333Uncharacterized membrane protein YkgRPRO_0000381980Add
BLAST

Proteomic databases

PaxDbiC1P5Z8.

Expressioni

Inductioni

Constitutively expressed (PubMed:19121005), repressed in minimal glucose medium, by SDS/EDTA (envelope stress), at 10 degrees Celsius and H2O2, induced in minimal glycerol medium, by thiol oxidant diamide, strongly induced at 45 degrees Celsius (PubMed:19734316) (at protein level). Transcription is dependent on CRP.2 Publications

Interactioni

Protein-protein interaction databases

STRINGi511145.b4671.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000009336.

Sequencei

Sequence statusi: Complete.

C1P5Z8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKENKVQQIS HKLINIVVFV AIVEYAYLFL HFY
Length:33
Mass (Da):3,999
Last modified:May 26, 2009 - v1
Checksum:i6084D3913CA8EF0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ACO59990.1.
AP009048 Genomic DNA. No translation available.
RefSeqiWP_000662258.1. NZ_LN832404.1.
YP_002791238.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiACO59990; ACO59990; b4671.
GeneIDi7751635.
KEGGieco:b4671.
PATRICi32115721. VBIEscCol129921_0303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ACO59990.1.
AP009048 Genomic DNA. No translation available.
RefSeqiWP_000662258.1. NZ_LN832404.1.
YP_002791238.1. NC_000913.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b4671.

Proteomic databases

PaxDbiC1P5Z8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACO59990; ACO59990; b4671.
GeneIDi7751635.
KEGGieco:b4671.
PATRICi32115721. VBIEscCol129921_0303.

Organism-specific databases

EcoGeneiEG14476. ykgR.

Phylogenomic databases

HOGENOMiHOG000009336.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2881.

Miscellaneous databases

PROiC1P5Z8.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiYKGR_ECOLI
AccessioniPrimary (citable) accession number: C1P5Z8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 1, 2009
Last sequence update: May 26, 2009
Last modified: September 7, 2016
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.