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C1L0I1 (RHAA_LISMC) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-rhamnose isomerase
EC=5.3.1.14
Gene names
Name:rhaA
Ordered Locus Names:Lm4b_02820
OrganismListeria monocytogenes serotype 4b (strain CLIP80459) [Complete proteome] [HAMAP]
Taxonomic identifier568819 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacilli › Bacillales › Listeriaceae › Listeria ›

Protein attributes

Sequence length420 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-rhamnose = L-rhamnulose. HAMAP-Rule MF_00541

Cofactor

Binds 1 manganese ion per subunit By similarity.

Pathway

Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 1/3. HAMAP-Rule MF_00541

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the rhamnose isomerase family.

Ontologies

Keywords
   Biological processRhamnose metabolism
   Cellular componentCytoplasm
   LigandManganese
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrhamnose catabolic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionL-rhamnose isomerase activity

Inferred from electronic annotation. Source: HAMAP

manganese ion binding

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 420420L-rhamnose isomerase HAMAP-Rule MF_00541
PRO_1000211953

Sites

Metal binding2641Manganese By similarity
Metal binding2961Manganese By similarity
Metal binding2981Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
C1L0I1 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: BDA91C60EF00A0E4

FASTA42048,051
        10         20         30         40         50         60 
MGQETEISKR YQVAKERYQA IGVDTEKALK TLKDIKISMH CWQGDDVKGF LNPDGELTGG 

        70         80         90        100        110        120 
IMATGNYPGA AHTPKQLRQD LEKAYSLIPG KHKLNLHAIY VDTDEKVDLN EIEPKHFTPW 

       130        140        150        160        170        180 
VEWAKEQGLG LDFNPTFFSH PMFKDNYTLA SPDKEVRDFW IEHGKRSRKI SEYFGKELGQ 

       190        200        210        220        230        240 
TSINNFWVPD GIKDCPIDRY TPRKRLMEAL DEVFAEKLDE KYTQEAVESK LFGLGAEAYT 

       250        260        270        280        290        300 
VGSHEFYMGY GITRDKLICL DAGHFHPTEV ISNKLSSLAL FSKGVMLHVS RPVRWDSDHV 

       310        320        330        340        350        360 
VIMDDELIEI GRELVRNDLL GITNIGLDFF DATINRIAAW VVGTRNTQKS LLKALLEPTA 

       370        380        390        400        410        420 
DLKKMELEND FTSRMAITEE LKDFPFGDVW NYFCEINGVP VGLDWLKEVK AYEEDVLLKR

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References

[1]"Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes."
Hain T., Ghai R., Billion A., Kuenne C.T., Steinweg C., Izar B., Mohamed W., Mraheil M., Domann E., Schaffrath S., Karst U., Goesmann A., Oehm S., Puhler A., Merkl R., Vorwerk S., Glaser P., Garrido P. expand/collapse author list , Rusniok C., Buchrieser C., Goebel W., Chakraborty T.
BMC Genomics 13:144-144(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CLIP80459.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FM242711 Genomic DNA. Translation: CAS06574.1.
RefSeqYP_002759504.1. NC_012488.1.

3D structure databases

ProteinModelPortalC1L0I1.
SMRC1L0I1. Positions 5-420.
ModBaseSearch...

Protein-protein interaction databases

STRING634178.Lm4b_02820.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAS06574; CAS06574; Lm4b_02820.
GeneID7703421.
KEGGlmc:Lm4b_02820.
PATRIC20308976. VBILisMon88360_2851.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000269679.
KOK01813.
OMAVNLHAIY.
ProtClustDBPRK01076.

Enzyme and pathway databases

BioCycLMON568819:GJF9-4165-MONOMER.
UniPathwayUPA00541; UER00601.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00541. RhaA.
InterProIPR009308. Rhamnose_isomerase.
IPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamPF06134. RhaA. 1 hit.
[Graphical view]
SUPFAMSSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
TIGRFAMsTIGR01748. rhaA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRHAA_LISMC
AccessionPrimary (citable) accession number: C1L0I1
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: May 26, 2009
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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