C1KW82 (C1KW82_LISMC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L20 HAMAP-Rule MF_00382 RuleBase RU000560

Gene names

Name:	rplT HAMAP-Rule MF_00382 EMBL CAS05557.1
Ordered Locus Names:	Lm4b_01799 EMBL CAS05557.1

Organism

Listeria monocytogenes serotype 4b (strain CLIP80459) [Complete proteome] [HAMAP] EMBL CAS05557.1

Taxonomic identifier

568819 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Listeriaceae › Listeria › Listeria monocytogenes

Protein attributes

Sequence length	119 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity. HAMAP-Rule MF_00382 RuleBase RU000560
Sequence similarities	Belongs to the ribosomal protein L20P family. HAMAP-Rule MF_00382 RuleBase RU000560

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_00382 RuleBase RU000560
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_00382 RuleBase RU000560 EMBL CAS05557.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ribosomal large subunit assembly Inferred from electronic annotation. Source: HAMAP translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1KW82 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 01D25FDCC407F544	FASTA	119	13,687
	10 20 30 40 50 60 MPRVKGGTVT RKRRKKIVKL AKGYYGSKHL LFKVANQAVM KSYQYAYRDR RQKKRDFRRL 70 80 90 100 110 WIARINAAAR MQDLSYSKLM HGLKLAGIDI NRKMLADLAV NDIASFNTLA DSAKKALAK

References

[1]

"Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes." Hain T., Ghai R., Billion A., Kuenne C.T., Steinweg C., Izar B., Mohamed W., Mraheil M., Domann E., Schaffrath S., Karst U., Goesmann A., Oehm S., Puhler A., Merkl R., Vorwerk S., Glaser P., Garrido P. , Rusniok C., Buchrieser C., Goebel W., Chakraborty T. BMC Genomics 13:144-144(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CLIP80459.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FM242711 Genomic DNA. Translation: CAS05557.1.
RefSeq	YP_002758493.1. NC_012488.1.
3D structure databases
ProteinModelPortal	C1KW82.
SMR	C1KW82. Positions 3-118.
ModBase	Search...
Protein-protein interaction databases
STRING	634178.Lm4b_01799.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAS05557; CAS05557; Lm4b_01799.
GeneID	7702716.
KEGG	lmc:Lm4b_01799.
PATRIC	20306827. VBILisMon88360_1812.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000035046.
KO	K02887.
OMA	GRRKNVW.
ProtClustDB	PRK05185.
Family and domain databases
HAMAP	MF_00382. Ribosomal_L20.
InterPro	IPR005813. Ribosomal_L20. [Graphical view]
PANTHER	PTHR10986. PTHR10986. 1 hit.
Pfam	PF00453. Ribosomal_L20. 1 hit. [Graphical view]
PRINTS	PR00062. RIBOSOMALL20.
TIGRFAMs	TIGR01032. rplT_bact. 1 hit.
PROSITE	PS00937. RIBOSOMAL_L20. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1KW82_LISMC

Accession

Primary (citable) accession number: C1KW82

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)