C1HPM0 (C1HPM0_9ESCH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520 RuleBase RU003455
EC=2.7.1.16 HAMAP MF_00520 RuleBase RU003455

Gene names

Name:	araB HAMAP MF_00520
ORF Names:	ESAG_04091 EMBL EEH88379.1

Organism

Escherichia sp. 3_2_53FAA EMBL EEH88379.1

Taxonomic identifier

469598 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	566 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520 RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 EMBL EEH88379.1 Transferase
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1HPM0 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: D4F27FDB6D60FB77	FASTA	566	61,196
	10 20 30 40 50 60 MAIAIGLDFG SDSVRALAVD CATGEEIATS VEWYPRWQKG QFCDAPNNQF RHHPRDYIES 70 80 90 100 110 120 MEAALKTVLA ELSAEQRAAV VGIGVDTTGS TPAPIDADGN VLALRPEFAE NPNAMFVLWK 130 140 150 160 170 180 DHTAVEEAEE ITRLCHAPGN VDYSRYIGGI YSSEWFWAKI LHVTRQDSAV AQSAASWIEL 190 200 210 220 230 240 CDWVPALLSG TTRPQDIRRG RCSAGHKSLW HESWGGLPPA SFFDELDPIL NRHLPSPLFT 250 260 270 280 290 300 DTWTADIPVG TLCPEWAQRL GLPESVVISG GAFDCHMGAV GAGAQPNALV KVIGTSTCDI 310 320 330 340 350 360 LIADKQSVGE RAVKGICGQV DGSVVPGFIG LEAGQSAFGD IYAWFGRVLS WPLEQLAAQH 370 380 390 400 410 420 PELKEQINAS QKQLLPALTE AWAKNPSLDH LPVVLDWFNG RRTPNANQRL KGVITDLNLA 430 440 450 460 470 480 TDAPLLFGGL IAATAFGARA IMECFTDQGI AVNNVMALGG IARKNQVIMQ ACCDVLNRPL 490 500 510 520 530 540 QIVASDQCCA LGAAIFAAVA AKVHADIPSA QQKMASAVEK TLQPRSEQAQ RFEQLYRRYQ 550 560 QWAMSAEQHY PPTSAPAQAA QAVPTL

References

[1]

"The Genome Sequence of Escherichia sp. strain 3_2_53FAA." The Broad Institute Genome Sequencing Platform Ward D., Young S.K., Kodira C.D., Zeng Q., Koehrsen M., Alvarado L., Berlin A., Borenstein D., Chen Z., Engels R., Freedman E., Gellesch M., Goldberg J., Griggs A., Gujja S., Heiman D., Hepburn T., Howarth C. , Jen D., Larson L., Lewis B., Mehta T., Park D., Pearson M., Roberts A., Saif S., Shea T., Shenoy N., Sisk P., Stolte C., Sykes S., Walk T., White J., Yandava C., Allen-Vercoe E., Strauss J., Ambrose C., Lander E., Nusbaum C., Ilzarbe M., Galagan J., Birren B. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 3_2_53FAA EMBL EEH88379.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS999463 Genomic DNA. Translation: EEH88379.1.
3D structure databases
ProteinModelPortal	C1HPM0.
SMR	C1HPM0. Positions 2-556.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
PATRIC	29416854. VBIEscSp50726_3848.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1HPM0_9ESCH

Accession

Primary (citable) accession number: C1HPM0

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)