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C1H8X1 (C1H8X1_PARBA) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length850 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
C1H8X1 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: E7F4DC9356DA5CD7

FASTA85094,872
        10         20         30         40         50         60 
MPIPAKKRKL NEPGPANQRT RGIESFFRSQ KSASATITPV QLEPGTPLAD EALARKLQAK 

        70         80         90        100        110        120 
WDEEAKSGNQ CSSNLQGYQH PSTLETKPEG LTQEFGTRLQ THGTSVCGDV SGNGKPNRVL 

       130        140        150        160        170        180 
SLQISSSAED TISQSIPFDQ SPLTFEPSSY AENLRAHWAL EGGHASYAIL TRAFVLVNNT 

       190        200        210        220        230        240 
QSRIKIVDTL VNLLRLLIEA DPDSLIFAVW LATNAIAPPY VPVELGLGGS AISKALKTAY 

       250        260        270        280        290        300 
GLNNQGLKTL WDKYGDAGDV AFEAKKRQTF TLRKPKPLSI RGVYESLLKI SRSKGPGSQE 

       310        320        330        340        350        360 
IKQRIVEKLL QDARGAEESR YIVRTLVQHL RIGAVKTTML IALARAFLYS RPSTKDFFVN 

       370        380        390        400        410        420 
NRTELSKLKR EEMASIYSRA EEIVKASYAR HPSYDDLVSC LLEIGISDEL LVRCGLTLHV 

       430        440        450        460        470        480 
PLHPMLGSIT RDLAQMLTKL QGRAFTCEYK YDGQRAQVHC DSSGKVSIFS RHLELMTDKY 

       490        500        510        520        530        540 
PDLVALIPRI RGEGVSSFIL EGEIVAVNQE TGELLAFQTL TNRAKKNVGI ESIEISVCLF 

       550        560        570        580        590        600 
AFDLMLLNGE PLLERPLRER RELLRGLFIE VPHHFTWVKN LDATSSDSEA VLSFFKEAID 

       610        620        630        640        650        660 
AKCEGLMVKL LDDSVQPELS KYESVAEPNL NSDLLLTTGP VEPNGNNKTR ARRSLLSTYE 

       670        680        690        700        710        720 
PDKRLESWLK VKKDYNAASD TLDLIPIAAW HGQGRKAKWW SPILLAVRNP ETGMLEAVTK 

       730        740        750        760        770        780 
CISGFTDKFY QANKEKYAEG SDNIISRPSY VDYRSEPEVW FEPQEVWEVA FADITLSPTY 

       790        800        810        820        830        840 
TAAIGLVSDE RGLSLRFPRF VRVREDKGLE EASSSDYLAN LWRKQTERLQ EEGAIAKPIT 

       850 
ESNHFGSEDD 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS572832 Genomic DNA. Translation: EEH36794.1.
RefSeqXP_002790976.1. XM_002790930.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9094153.
KEGGpbl:PAAG_07212.

Phylogenomic databases

KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1H8X1_PARBA
AccessionPrimary (citable) accession number: C1H8X1
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: January 22, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)