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C1FML6 (C1FML6_CLOBJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alanine racemase EMBL ACO83977.1
EC=5.1.1.1 EMBL ACO83977.1
Gene names
Name:alr EMBL ACO83977.1
Ordered Locus Names:CLM_3860
OrganismClostridium botulinum (strain Kyoto / Type A2) [Complete proteome] [HAMAP]
Taxonomic identifier536232 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase SAAS SAAS020622 RuleBase RU000608 EMBL ACO83977.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C1FML6 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 20972B2A2C4E7236

FASTA38643,062
        10         20         30         40         50         60 
MFRNLRAVWA EIDLDNLQHN LKQIKKICGN KEIIGVIKAN AYGHGAMEIA PTLLENGVSR 

        70         80         90        100        110        120 
LAVAVLSEAM ELRMSGVKEP IMILGYTPWA LGDMLLDNDI EQSVYSYNDA LELSKIAVLK 

       130        140        150        160        170        180 
RKILKIHIVV DTGMGRIGFL PTKESVEDVY KISKLPNIEI EGVFSHFSSA DESDKDYTLY 

       190        200        210        220        230        240 
QMNKYNAFIN KLEEKNIQVP IKHIANSAAI IDLENTHLDA VRAGIIMYGY YPSNYVLRNN 

       250        260        270        280        290        300 
INLKPVMSLK TSIVHIKKVS SGEYISYGGT FKTKRESIIA TLPIGYADGY NRLLSNKGKV 

       310        320        330        340        350        360 
IVNGKLAPVI GRVCMDQCMI DVTFIENLKV GDVVTIMGEE NGVSYTAEDI ASQIGTISYE 

       370        380 
VICNVNKRVP RVYKKDGKII NVVNYI

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References

[1]"Genome sequence of Clostridium botulinum A2 Kyoto."
Shrivastava S., Brinkac L.M., Brown J.L., Bruce D., Detter C.C., Johnson E.A., Munk C.A., Smith L.A., Smith T.J., Sutton G., Brettin T.S.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Kyoto / Type A2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001581 Genomic DNA. Translation: ACO83977.1.
RefSeqYP_002805939.1. NC_012563.1.

3D structure databases

ProteinModelPortalC1FML6.
ModBaseSearch...

Protein-protein interaction databases

STRING536232.CLM_3860.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACO83977; ACO83977; CLM_3860.
GeneID7765417.
KEGGcby:CLM_3860.
PATRIC19384113. VBICloBot91161_3651.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031444.
KOK01775.
OMARITADEM.
ProtClustDBPRK00053.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1FML6_CLOBJ
AccessionPrimary (citable) accession number: C1FML6
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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