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Protein
Submitted name:

Putative DNA ligase, ATP-dependent

Gene

ACP_3506

Organism
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACAP240015:GKF4-3452-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:ACP_3506Imported
OrganismiAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)Imported
Taxonomic identifieri240015 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium
ProteomesiUP000002207: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi240015.ACP_3506.

Structurei

3D structure databases

ProteinModelPortaliC1F736.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1F736-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRDFGVTPEP KGAAGKRLNA GALSFVVQKH AASHLHYDFR LEWQGVLKSW
60 70 80 90 100
AVAKGPSYYP GDKRLAVEVE DHPLAYGGFE GIIPQGQYGG GTVMLWDRGT
110 120 130 140 150
WEPLGDAARQ LRDGNLKFRL HGEKLKGCWA LVRMKGKFAG RSKPSWLLIK
160 170 180 190 200
EHDESERGDD APAIVDEAPL SVVSGRDMQQ IAEAQDAVWN AKGAQAQSSA
210 220 230 240 250
AAHRANAPKQ SMPAALLPRE IAATLKRLPS EALPRFVPPQ LATLVSEPGA
260 270 280 290 300
GENRVYEIKL DGYRIEARVD KKADPPVQLL TRTGLDWTSR MRPLADALLR
310 320 330 340 350
LPVQTALLDG ELVVLEEKGT TSFAKLQAVL KDDSRHSLTY FAFDLLHLDG
360 370 380 390 400
HNLRGEPLLI RKKILSALLT DLPASSAVRF SEHVKGNGEE IFQKACKLGA
410 420 430 440 450
EGVISKLAQG FYHSGRSRDW WKLKCYLEQE LVIGGYTLPS NGTYGVGALL
460 470 480 490 500
LGYYDAGKLI YAGRTGTGFT RATHRRMREQ LEAIRRGTAP FAKVEQDARR
510 520 530 540 550
GAIWVQPQLV AQVSFASWTT DGLVRQAAFK GLREDKPAKT VRREGGQMPE
560 570 580 590 600
SEGKAAKKPR ANSTTVRSEL RLTHRDKVLD KDSGLTKEAL ADYYARIAPF
610 620 630 640 650
MLPHIQGRAV SIVRCPAGSD LSCFFQKHNN HTLPGEIESI EIASRKTGKV
660 670 680 690 700
EPFLTISSAN DLLVLAQASV LEIHAWGSTR DSLEKPDRLT IDLDPDDAID
710 720 730 740 750
WKTLAGAAVE VRKRLARAGV KSFLKSTGGK GLHVVAPIEP EHEWPEVKEF
760 770 780 790 800
AHRMVLEMEK ENPDLYLTRM TKAARKGKIY LDYLRNERGA TAIAPFSPRA
810 820 830 840 850
RPGAPVALPL RWSELKSAER PIFRVTEFDG WRKRLKADPW RGFLQLHQSL
860
RLPEAARVSP GGR
Length:863
Mass (Da):95,572
Last modified:May 26, 2009 - v1
Checksum:i7A93059AF0487F45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO34127.1.
RefSeqiYP_002756500.1. NC_012483.1.

Genome annotation databases

EnsemblBacteriaiACO34127; ACO34127; ACP_3506.
GeneIDi7698868.
KEGGiaca:ACP_3506.
PATRICi20670209. VBIAciCap40988_3360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO34127.1.
RefSeqiYP_002756500.1. NC_012483.1.

3D structure databases

ProteinModelPortaliC1F736.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi240015.ACP_3506.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACO34127; ACO34127; ACP_3506.
GeneIDi7698868.
KEGGiaca:ACP_3506.
PATRICi20670209. VBIAciCap40988_3360.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciACAP240015:GKF4-3452-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51196 / DSM 11244 / JCM 7670Imported.

Entry informationi

Entry nameiC1F736_ACIC5
AccessioniPrimary (citable) accession number: C1F736
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: January 7, 2015
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.