C1F736 (C1F736_ACIC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative DNA ligase, ATP-dependent EMBL ACO34127.1

Gene names

Ordered Locus Names:

ACP_3506

Organism

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) [Complete proteome] [HAMAP]

Taxonomic identifier

240015 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Acidobacteriia › Acidobacteriales › Acidobacteriaceae › Acidobacterium › Acidobacterium capsulatum

Protein attributes

Sequence length	863 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACO34127.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1F736 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 7A93059AF0487F45	FASTA	863	95,572
	10 20 30 40 50 60 MRDFGVTPEP KGAAGKRLNA GALSFVVQKH AASHLHYDFR LEWQGVLKSW AVAKGPSYYP 70 80 90 100 110 120 GDKRLAVEVE DHPLAYGGFE GIIPQGQYGG GTVMLWDRGT WEPLGDAARQ LRDGNLKFRL 130 140 150 160 170 180 HGEKLKGCWA LVRMKGKFAG RSKPSWLLIK EHDESERGDD APAIVDEAPL SVVSGRDMQQ 190 200 210 220 230 240 IAEAQDAVWN AKGAQAQSSA AAHRANAPKQ SMPAALLPRE IAATLKRLPS EALPRFVPPQ 250 260 270 280 290 300 LATLVSEPGA GENRVYEIKL DGYRIEARVD KKADPPVQLL TRTGLDWTSR MRPLADALLR 310 320 330 340 350 360 LPVQTALLDG ELVVLEEKGT TSFAKLQAVL KDDSRHSLTY FAFDLLHLDG HNLRGEPLLI 370 380 390 400 410 420 RKKILSALLT DLPASSAVRF SEHVKGNGEE IFQKACKLGA EGVISKLAQG FYHSGRSRDW 430 440 450 460 470 480 WKLKCYLEQE LVIGGYTLPS NGTYGVGALL LGYYDAGKLI YAGRTGTGFT RATHRRMREQ 490 500 510 520 530 540 LEAIRRGTAP FAKVEQDARR GAIWVQPQLV AQVSFASWTT DGLVRQAAFK GLREDKPAKT 550 560 570 580 590 600 VRREGGQMPE SEGKAAKKPR ANSTTVRSEL RLTHRDKVLD KDSGLTKEAL ADYYARIAPF 610 620 630 640 650 660 MLPHIQGRAV SIVRCPAGSD LSCFFQKHNN HTLPGEIESI EIASRKTGKV EPFLTISSAN 670 680 690 700 710 720 DLLVLAQASV LEIHAWGSTR DSLEKPDRLT IDLDPDDAID WKTLAGAAVE VRKRLARAGV 730 740 750 760 770 780 KSFLKSTGGK GLHVVAPIEP EHEWPEVKEF AHRMVLEMEK ENPDLYLTRM TKAARKGKIY 790 800 810 820 830 840 LDYLRNERGA TAIAPFSPRA RPGAPVALPL RWSELKSAER PIFRVTEFDG WRKRLKADPW 850 860 RGFLQLHQSL RLPEAARVSP GGR

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51196 / DSM 11244 / JCM 7670.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001472 Genomic DNA. Translation: ACO34127.1.
RefSeq	YP_002756500.1. NC_012483.1.
3D structure databases
ProteinModelPortal	C1F736.
ModBase	Search...
Protein-protein interaction databases
STRING	240015.ACP_3506.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO34127; ACO34127; ACP_3506.
GeneID	7698868.
KEGG	aca:ACP_3506.
PATRIC	20670209. VBIAciCap40988_3360.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
Enzyme and pathway databases
BioCyc	ACAP240015:GI5H-2878-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1F736_ACIC5

Accession

Primary (citable) accession number: C1F736

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)