C1F640 (C1F640_ACIC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP MF_01369

Gene names

Name:	rplW HAMAP MF_01369 EMBL ACO34105.1
Ordered Locus Names:	ACP_1449

Organism

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) [Complete proteome] [HAMAP]

Taxonomic identifier

240015 [NCBI]

Taxonomic lineage

Bacteria › Acidobacteria › Acidobacteriales › Acidobacteriaceae › Acidobacterium

Protein attributes

Sequence length	97 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01369 EMBL ACO34105.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1F640 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: C54E8252EEEF9152	FASTA	97	11,107
	10 20 30 40 50 60 MPTTYTVIRR PLITERALTV KETENTLVFE VAGKATKTEV KQAVEALFKV KVSTVRTANY 70 80 90 AGKERRRGRF VGYRPDWKKA YVRLAPGEKM PEYVNSL

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed: 19201974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001472 Genomic DNA. Translation: ACO34105.1.
RefSeq	YP_002754535.1. NC_012483.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C1F640.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7701230.
GenomeReviews	Gene locus ACP_1449 in contig CP001472_GR.
KEGG	aca:ACP_1449.
PATRIC	20666211. VBIAciCap40988_1395.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	WKKAYVS.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1F640_ACIC5

Accession

Primary (citable) accession number: C1F640

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)