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C1F3Y3 (C1F3Y3_ACIC5) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase subunit beta HAMAP MF_01321
Short name=RNAP subunit beta HAMAP MF_01321
EC=2.7.7.6 HAMAP MF_01321
Alternative name(s):
RNA polymerase subunit beta HAMAP MF_01321
Transcriptase subunit beta HAMAP MF_01321
Gene names
Name:rpoB HAMAP MF_01321 EMBL ACO34290.1
Ordered Locus Names:ACP_2928
OrganismAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) [Complete proteome] [HAMAP]
Taxonomic identifier240015 [NCBI]
Taxonomic lineageBacteria › Acidobacteria › Acidobacteriales › Acidobacteriaceae › Acidobacterium

Protein attributes

Sequence length1496 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP MF_01321 RuleBase RU000432

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP MF_01321

Subunit structure

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity. HAMAP MF_01321 RuleBase RU000433

Sequence similarities

Belongs to the RNA polymerase beta chain family. HAMAP MF_01321 RuleBase RU000434

Sequences

Sequence LengthMass (Da)Tools
C1F3Y3 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: D62E4DE7064FB881

FASTA1,496168,031
        10         20         30         40         50         60 
MPNENRAIRS RLDFSKIPTS IKIPNLIEVQ RRSYERFLQM DKLPTEREDN GLQSVFTSVF 

        70         80         90        100        110        120 
PIADFRNISQ LDFVDYSIGN WECKCGHLKG LHHLRTACTH CGNMVITDPF HPGDVLCQKC 

       130        140        150        160        170        180 
GTYNKNTPDF CNKCGDPVGL QLKYDQAECE ERGMTFSAPL KVTVRLTIYD KDPETGAKTI 

       190        200        210        220        230        240 
RDIKEQEVFF GDIPLMTQNG TFIVNGTERV IVSQLHRSPG VFFETANNRT YFLGKIIPYR 

       250        260        270        280        290        300 
GSWVEFEYDQ KNTLYVRIDR KRKFLGTIFL RALGLKSDEE ILKTFYTVDR IQVKDGKLYW 

       310        320        330        340        350        360 
TVAEAGTPTH LLGAKPAHAV VHNGQEIVHS GRKITASVLK AIREAKLEQI EIDTTDLDGA 

       370        380        390        400        410        420 
MTAADVIDTE TGEVLLEANH ELTPDKLHKI VEAGIPTVEV FFPERDDVGN IITNTLRRDS 

       430        440        450        460        470        480 
VRKPEEALIE IYRKLRPGDP PTLDTATALF EGMFFDPRKY DFSRVGRLKF NIKLYENAEE 

       490        500        510        520        530        540 
TPLDHRTLTA GDFYSTIRYL LKLRKNIGVV DDIDHLGNRR VRAVGELMEN QFRIGLVRME 

       550        560        570        580        590        600 
RAIKEKMSVY QEMSTAMPHD LINAKPVMAA IREFFGSSQL SQFMDQTNPL SEITHKRRLS 

       610        620        630        640        650        660 
ALGPGGLSRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL ISSLSCFARI NEYGFIESPY 

       670        680        690        700        710        720 
RRVRDGQVLD FVAVTNAGES GLRVGDYLEK AEALKLNDKL RAEKKRIIEF EPFSFYLSAW 

       730        740        750        760        770        780 
EEDRHTIAQA NVKLDENKHI VEDLVNARRQ GNFVLVNREE VDYVDVSPKQ LVSVAASLVP 

       790        800        810        820        830        840 
FLEHDDANRA LMGANMQRQS VPLLVSEAPL VGTGMEGVTA RDSGAVILAR RNGVVDSVDS 

       850        860        870        880        890        900 
ERIIVRVEGE HHPTQLSREV GSDIYQLIKF KRSNQNTCIN QKPIVRKGDR VLKGQVIADG 

       910        920        930        940        950        960 
PCTEQGELGL GRNVLVAFMP WRGYNFEDAI LISEKLVKED YYTSVHIEEF EIEARDTKLG 

       970        980        990       1000       1010       1020 
PEEITRDIPN VSEHALRDLD ESGIIRIGAK VKHNDILVGK VTPKGETQLT PEEKLLRAIF 

      1030       1040       1050       1060       1070       1080 
GEKAGDVRDA SLTCPPGIEG TVVDVRIFSR KGQEKDERAK QIEAEQVAKL EKNLEDEIRI 

      1090       1100       1110       1120       1130       1140 
LTDERLKRLE AILGGKVVLA DLHDERTNKR LLVKDAVLDR DAIERISTRN LKRIRYADKD 

      1150       1160       1170       1180       1190       1200 
PRVNEQIDEI EEMTSRQIDV LRKITNERIA KLQKGDELSP GVIKMVKIYI AMKRKLSVGD 

      1210       1220       1230       1240       1250       1260 
KMAGRHGNKG VIARILPEED MPYLPDGTPV EIVLNPLGVP SRMNVGQILE THLGWAAHDL 

      1270       1280       1290       1300       1310       1320 
GVQVAAIVKQ HQDANVIREV IKERFKGTAV INQLIELEDE QLLRVGAGMA RGIWFGTAVF 

      1330       1340       1350       1360       1370       1380 
DGAKEEEIKA LLESAGLPTS GKTKLFDGMT GEAFEQPVTV GFIYMLKLSH LVDDKIHARS 

      1390       1400       1410       1420       1430       1440 
IGPYSLITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYIL QELLTAKSDD VYGRTKIYEA 

      1450       1460       1470       1480       1490 
IVKGEAAIEP GVPESFNVLI RELQSLCLDV ELIKQAPGAG PEAEDENTVP QLAAAD

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001472 Genomic DNA. Translation: ACO34290.1.
RefSeqYP_002755938.1. NC_012483.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGC1F3Y3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7700367.
GenomeReviewsGene locus ACP_2928 in contig CP001472_GR.
KEGGaca:ACP_2928.
PATRIC20669087. VBIAciCap40988_2802.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAIGRNKTY.
ProtClustDBPRK00405.

Family and domain databases

HAMAPMF_01321. RNApol_bact_RpoB.
[Tree]
InterProIPR010243. DNA-dir_RNA_pol_bsu_bac-type.
IPR019462. DNA-dir_RNA_pol_bsu_external_1.
IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007644. RNA_pol_bsu_protrusion.
IPR007642. RNA_pol_Rpb2_2.
IPR007645. RNA_pol_Rpb2_3.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view]
Gene3DG3DSA:2.30.150.10. G3DSA:2.30.150.10. 1 hit.
G3DSA:2.40.270.10. G3DSA:2.40.270.10. 2 hits.
G3DSA:2.40.50.150. Ribosomal_L2. 2 hits.
KOK03043.
PANTHERPTHR20856:SF3. PTHR20856:SF3. 1 hit.
PTHR20856. RNA_pol_I_sub2. 1 hit.
PfamPF04563. RNA_pol_Rpb2_1. 1 hit.
PF04561. RNA_pol_Rpb2_2. 2 hits.
PF04565. RNA_pol_Rpb2_3. 1 hit.
PF10385. RNA_pol_Rpb2_45. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]
TIGRFAMsTIGR02013. RpoB. 1 hit.
PROSITEPS01166. RNA_POL_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1F3Y3_ACIC5
AccessionPrimary (citable) accession number: C1F3Y3
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info