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Protein

50S ribosomal protein L10

Gene

rplJ

Organism
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.UniRule annotation

GO - Molecular functioni

  1. large ribosomal subunit rRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. ribosome biogenesis Source: InterPro
  2. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciACAP240015:GKF4-2871-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10UniRule annotation
Gene namesi
Name:rplJUniRule annotation
Ordered Locus Names:ACP_2926
OrganismiAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)
Taxonomic identifieri240015 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium
ProteomesiUP000002207 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18118150S ribosomal protein L10PRO_1000195519Add
BLAST

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.UniRule annotation

Protein-protein interaction databases

STRINGi240015.ACP_2926.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000004852.
KOiK02864.
OMAiGVYIRVV.
OrthoDBiEOG6DNTDR.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1F3Y1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTKARKAE RIETLAKELE HSTSAIIGTF AKLTVSQDFE LRQKVRAAGG
60 70 80 90 100
RYRVVKNKLA ARASKGTQIE AALQGLKGVS SVAYTSGDPV ALAKAMADWV
110 120 130 140 150
KENAEFTFKL GIVDGKVITV EEVDQLAKMP GKEEIFSKLL YLINAPAQRL
160 170 180
ATVMAATGRD LAVVINQGVE KGKFSGEQAS A
Length:181
Mass (Da):19,409
Last modified:May 26, 2009 - v1
Checksum:i5314C07D5D68C890
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO34364.1.
RefSeqiYP_002755936.1. NC_012483.1.

Genome annotation databases

EnsemblBacteriaiACO34364; ACO34364; ACP_2926.
KEGGiaca:ACP_2926.
PATRICi20669083. VBIAciCap40988_2800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO34364.1.
RefSeqiYP_002755936.1. NC_012483.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi240015.ACP_2926.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACO34364; ACO34364; ACP_2926.
KEGGiaca:ACP_2926.
PATRICi20669083. VBIAciCap40988_2800.

Phylogenomic databases

eggNOGiCOG0244.
HOGENOMiHOG000004852.
KOiK02864.
OMAiGVYIRVV.
OrthoDBiEOG6DNTDR.

Enzyme and pathway databases

BioCyciACAP240015:GKF4-2871-MONOMER.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161.

Entry informationi

Entry nameiRL10_ACIC5
AccessioniPrimary (citable) accession number: C1F3Y1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: May 26, 2009
Last modified: April 29, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.