C1F3D1 (C1F3D1_ACIC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564

Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564

Gene names

Name:	rph HAMAP-Rule MF_00564 EMBL ACO33868.1
Ordered Locus Names:	ACP_2825

Organism

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) [Complete proteome] [HAMAP]

Taxonomic identifier

240015 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Acidobacteriia › Acidobacteriales › Acidobacteriaceae › Acidobacterium › Acidobacterium capsulatum

Protein attributes

Sequence length	246 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381
Sequence similarities	Belongs to the RNase PH family. HAMAP-Rule MF_00564

Ontologies

Keywords
Biological process	tRNA processing HAMAP-Rule MF_00564 SAAS SAAS002381
Molecular function	Nucleotidyltransferase HAMAP-Rule MF_00564 SAAS SAAS002381 EMBL ACO33868.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Molecular_function	tRNA binding Inferred from electronic annotation. Source: HAMAP tRNA nucleotidyltransferase activity Inferred from electronic annotation. Source: HAMAP tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1F3D1 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 0745EC0B4811C9C3	FASTA	246	26,633
	10 20 30 40 50 60 MTEKEFFRAS GRRPDEMRPV KLTAGYTSMP EGSVLIEVGH TRVLCAATVE QGVPGWMRNS 70 80 90 100 110 120 GRGWVTAEYG MLPRATLTRT ARESERGKVG GRTHEIQRLI GRSLRAVVDM QALGERTVIL 130 140 150 160 170 180 DCDVLQADGG TRTAAITGAC TALAIACQRL VKAGTLKASP LRQLVAATSV GIVEGTTLLD 190 200 210 220 230 240 LAYEEDSQAE VDMNLVMTED GGLVEVQATA ERQAFPRARM MEMMDYAEKG IRELLALQRA AMESAG

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51196 / DSM 11244 / JCM 7670.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001472 Genomic DNA. Translation: ACO33868.1.
RefSeq	YP_002755843.1. NC_012483.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	240015.ACP_2825.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO33868; ACO33868; ACP_2825.
GeneID	7698152.
KEGG	aca:ACP_2825.
PATRIC	20668889. VBIAciCap40988_2708.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HOG000229516.
KO	K00989.
OMA	MLPRATG.
Enzyme and pathway databases
BioCyc	ACAP240015:GI5H-2618-MONOMER.
Family and domain databases
HAMAP	MF_00564. RNase_PH.
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1F3D1_ACIC5

Accession

Primary (citable) accession number: C1F3D1

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)