C1F2J2 (C1F2J2_ACIC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

Ordered Locus Names:

ACP_2652

Organism

Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) [Complete proteome] [HAMAP]

Taxonomic identifier

240015 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Acidobacteriia › Acidobacteriales › Acidobacteriaceae › Acidobacterium › Acidobacterium capsulatum

Protein attributes

Sequence length	540 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL ACO33334.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1F2J2 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: A930EDCDC1CC8371	FASTA	540	58,916
	10 20 30 40 50 60 MTRPAPQTSA PFDAFARCND ALAATPGKLA RREILVAYLR PLAVPDAARA ASSVPPTLTL 70 80 90 100 110 120 ADVEQAFAQI AAARGPAPRL QRVRQLLACA TPLEIKYLIK LMLGDLRTGV KQALVEEAIA 130 140 150 160 170 180 QLHEVELPTL RRALMLNGSL PEVVAMAAAH TLPQAQMRLF HPLGFMLASP VAGVEEAMAR 190 200 210 220 230 240 FASKPDARQA SEPPTAIQIE DKYDGIRAQL HCGDPAQPGR VTLFSRNRED IGISFPELIE 250 260 270 280 290 300 AFAAMPEPVV LDGEILAWQP ASATGAARAM PFAALTQRLG RKRVTAQMRD QIPVVFMAFD 310 320 330 340 350 360 LLARHGELLL DQPLSSRRQQ LEAFLAAASP LALPAGAAQS SLFAAEESAD FLRLKLAPAT 370 380 390 400 410 420 QLESAAQLDR AYQDARARGN EGVMLKALAS PYQPGRRGLA WLKLKRELAT LDVVVTGAEF 430 440 450 460 470 480 GHGKRAHVLS DYTFAVRDGE ELKNIGKAYS GLTDAEIAAN TKFLKEHTLE DFGHFRSVEP 490 500 510 520 530 540 LLVLEVAFNN IQRSERHNSG FALRFPRIVR IRDDKPVEEI DTLARVEELY QSQPDKPPEA

References

[1]

"Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils." Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M. , DeBoy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Appl. Environ. Microbiol. 75:2046-2056(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51196 / DSM 11244 / JCM 7670.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001472 Genomic DNA. Translation: ACO33334.1.
RefSeq	YP_002755673.1. NC_012483.1.
3D structure databases
ProteinModelPortal	C1F2J2.
ModBase	Search...
Protein-protein interaction databases
STRING	240015.ACP_2652.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO33334; ACO33334; ACP_2652.
GeneID	7697955.
KEGG	aca:ACP_2652.
PATRIC	20668547. VBIAciCap40988_2537.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036008.
KO	K01971.
OMA	KENGMEV.
ProtClustDB	CLSK2467850.
Enzyme and pathway databases
BioCyc	ACAP240015:GI5H-2067-MONOMER.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1F2J2_ACIC5

Accession

Primary (citable) accession number: C1F2J2

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)