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C1F2J2

- C1F2J2_ACIC5

UniProt

C1F2J2 - C1F2J2_ACIC5

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Protein

DNA ligase

Gene

ACP_2652

Organism
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciACAP240015:GKF4-2601-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:ACP_2652Imported
OrganismiAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)Imported
Taxonomic identifieri240015 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium
ProteomesiUP000002207: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi240015.ACP_2652.

Structurei

3D structure databases

ProteinModelPortaliC1F2J2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036008.
KOiK01971.
OMAiVPIVIPY.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1F2J2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTRPAPQTSA PFDAFARCND ALAATPGKLA RREILVAYLR PLAVPDAARA
60 70 80 90 100
ASSVPPTLTL ADVEQAFAQI AAARGPAPRL QRVRQLLACA TPLEIKYLIK
110 120 130 140 150
LMLGDLRTGV KQALVEEAIA QLHEVELPTL RRALMLNGSL PEVVAMAAAH
160 170 180 190 200
TLPQAQMRLF HPLGFMLASP VAGVEEAMAR FASKPDARQA SEPPTAIQIE
210 220 230 240 250
DKYDGIRAQL HCGDPAQPGR VTLFSRNRED IGISFPELIE AFAAMPEPVV
260 270 280 290 300
LDGEILAWQP ASATGAARAM PFAALTQRLG RKRVTAQMRD QIPVVFMAFD
310 320 330 340 350
LLARHGELLL DQPLSSRRQQ LEAFLAAASP LALPAGAAQS SLFAAEESAD
360 370 380 390 400
FLRLKLAPAT QLESAAQLDR AYQDARARGN EGVMLKALAS PYQPGRRGLA
410 420 430 440 450
WLKLKRELAT LDVVVTGAEF GHGKRAHVLS DYTFAVRDGE ELKNIGKAYS
460 470 480 490 500
GLTDAEIAAN TKFLKEHTLE DFGHFRSVEP LLVLEVAFNN IQRSERHNSG
510 520 530 540
FALRFPRIVR IRDDKPVEEI DTLARVEELY QSQPDKPPEA
Length:540
Mass (Da):58,916
Last modified:May 26, 2009 - v1
Checksum:iA930EDCDC1CC8371
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO33334.1.
RefSeqiYP_002755673.1. NC_012483.1.

Genome annotation databases

EnsemblBacteriaiACO33334; ACO33334; ACP_2652.
GeneIDi7697955.
KEGGiaca:ACP_2652.
PATRICi20668547. VBIAciCap40988_2537.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA. Translation: ACO33334.1 .
RefSeqi YP_002755673.1. NC_012483.1.

3D structure databases

ProteinModelPortali C1F2J2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 240015.ACP_2652.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACO33334 ; ACO33334 ; ACP_2652 .
GeneIDi 7697955.
KEGGi aca:ACP_2652.
PATRICi 20668547. VBIAciCap40988_2537.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036008.
KOi K01971.
OMAi VPIVIPY.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci ACAP240015:GKF4-2601-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51196 / DSM 11244 / JCM 7670Imported.

Entry informationi

Entry nameiC1F2J2_ACIC5
AccessioniPrimary (citable) accession number: C1F2J2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3