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Protein

DNA ligase

Gene

ACP_2652

Organism
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationImported
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciACAP240015:G1GV4-2527-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:ACP_2652Imported
OrganismiAcidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)Imported
Taxonomic identifieri240015 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium
Proteomesi
  • UP000002207 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi240015.ACP_2652

Structurei

3D structure databases

ProteinModelPortaliC1F2J2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini287 – 438DNA_LIGASE_A3InterPro annotationAdd BLAST152

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107T0X Bacteria
COG1793 LUCA
HOGENOMiHOG000036008
KOiK10747
OMAiWIKYKRD
OrthoDBiPOG091H09SJ

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

C1F2J2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRPAPQTSA PFDAFARCND ALAATPGKLA RREILVAYLR PLAVPDAARA
60 70 80 90 100
ASSVPPTLTL ADVEQAFAQI AAARGPAPRL QRVRQLLACA TPLEIKYLIK
110 120 130 140 150
LMLGDLRTGV KQALVEEAIA QLHEVELPTL RRALMLNGSL PEVVAMAAAH
160 170 180 190 200
TLPQAQMRLF HPLGFMLASP VAGVEEAMAR FASKPDARQA SEPPTAIQIE
210 220 230 240 250
DKYDGIRAQL HCGDPAQPGR VTLFSRNRED IGISFPELIE AFAAMPEPVV
260 270 280 290 300
LDGEILAWQP ASATGAARAM PFAALTQRLG RKRVTAQMRD QIPVVFMAFD
310 320 330 340 350
LLARHGELLL DQPLSSRRQQ LEAFLAAASP LALPAGAAQS SLFAAEESAD
360 370 380 390 400
FLRLKLAPAT QLESAAQLDR AYQDARARGN EGVMLKALAS PYQPGRRGLA
410 420 430 440 450
WLKLKRELAT LDVVVTGAEF GHGKRAHVLS DYTFAVRDGE ELKNIGKAYS
460 470 480 490 500
GLTDAEIAAN TKFLKEHTLE DFGHFRSVEP LLVLEVAFNN IQRSERHNSG
510 520 530 540
FALRFPRIVR IRDDKPVEEI DTLARVEELY QSQPDKPPEA
Length:540
Mass (Da):58,916
Last modified:May 26, 2009 - v1
Checksum:iA930EDCDC1CC8371
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001472 Genomic DNA Translation: ACO33334.1
RefSeqiWP_015897717.1, NC_012483.1

Genome annotation databases

EnsemblBacteriaiACO33334; ACO33334; ACP_2652
KEGGiaca:ACP_2652

Entry informationi

Entry nameiC1F2J2_ACIC5
AccessioniPrimary (citable) accession number: C1F2J2
Entry historyiIntegrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: March 28, 2018
This is version 59 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health