C1EGI4 (C1EGI4_MICSR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alpha-amylase RuleBase RU361134
EC=3.2.1.1 RuleBase RU361134

Gene names

Name:	AMY1 EMBL ACO67331.1
ORF Names:	MICPUN_96728 EMBL ACO67331.1

Organism

Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga) [Complete proteome]

Taxonomic identifier

296587 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Chlorophyta › Mamiellophyceae › Mamiellales › Micromonas

Protein attributes

Sequence length	447 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134
Sequence similarities	Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
Biological process	Carbohydrate metabolism RuleBase RU361134
Molecular function	Glycosidase RuleBase RU361134 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alpha-amylase activity Inferred from electronic annotation. Source: InterPro calcium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1EGI4 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 3C78478D57632686	FASTA	447	50,076
	10 20 30 40 50 60 MVPDIAATGV THLWLPPPSH SVSPEGYLPR HLWNLDSSEY GDQNELVALN ASLREAGIMP 70 80 90 100 110 120 VCDVVINHRT ADEIGPEGVY NVYSDEVDHT GTAVHWGRHM ITCNDPAFHG SGHEDSGDNY 130 140 150 160 170 180 DAAPDLDHAN DELRATLKRW LRWLRWDVGF GGFRFDFVRG YAPEYTEEYV KETTSRGDFC 190 200 210 220 230 240 VGENWVDLAW EGSHLNYNQD GPRGKLVEWL AATHGTCALF DFPTKGILQR AVTHVEFYRL 250 260 270 280 290 300 RDPASRPPGL SGWIPSRAVT FVDNHDTGAP QNHWPFPPDR IALGYAYVLT HPGIPCVFGP 310 320 330 340 350 360 HLWGDDPVLS GVIRLLIDLR KRCCVCADAP VKIQMAENDI YVAKVGHRLT VKLGPRYEMP 370 380 390 400 410 420 VELIPKEPEW SLAVAGEDYA VWERVQYDTD ADAKVVAMER EMMDVGDDGE YYPLERVPVD 430 440 NSRQSIGSWI EPPPGIVEPS DGEADPR

References

[1]

"Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas." Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L., Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E., Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M., Parker M.S., Rombauts S. , Salamov A., Von Dassow P., Badger J.H., Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W., Gready J.E., John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F., Moreau H., Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I., Piegu B., Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T., Zelensky A., Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W., Van de Peer Y., Grigoriev I.V. Science 324:268-272(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RCC299 / NOUM17.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001332 Genomic DNA. Translation: ACO67331.1.
RefSeq	XP_002506073.1. XM_002506027.1.
3D structure databases
ProteinModelPortal	C1EGI4.
ModBase	Search...
MobiDB	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8248806.
KEGG	mis:MICPUN_96728.
Phylogenomic databases
HOGENOM	HOG000239525.
KO	K01176.
Family and domain databases
Gene3D	2.60.40.1180. 1 hit. 3.20.20.80. 1 hit.
InterPro	IPR012850. A-amylase_bs_C. IPR006046. Alpha_amylase. IPR015902. Glyco_hydro_13. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR013781. Glyco_hydro_catalytic_dom. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
PANTHER	PTHR10357. PTHR10357. 1 hit.
Pfam	PF07821. Alpha-amyl_C2. 1 hit. PF00128. Alpha-amylase. 1 hit. [Graphical view]
PRINTS	PR00110. ALPHAAMYLASE.
SMART	SM00810. Alpha-amyl_C2. 1 hit. [Graphical view]
SUPFAM	SSF51445. SSF51445. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1EGI4_MICSR

Accession

Primary (citable) accession number: C1EGI4

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	July 9, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)