C1DEN6 (C1DEN6_AZOVD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Avin_20160

Organism

Azotobacter vinelandii (strain DJ / ATCC BAA-1303) [Complete proteome] [HAMAP] EMBL ACO78221.1

Taxonomic identifier

322710 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Azotobacter group › Azotobacter › Azotobacter vinelandii

Protein attributes

Sequence length	301 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1DEN6 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 592891365073908F	FASTA	301	34,431
	10 20 30 40 50 60 MSDASAASLR PSVLHLPRGD WRTVLDCLCA HFPAIGREIW LERMRRGRVL DGEGNVLGPE 70 80 90 100 110 120 YPYREALRVH YFREVAAETP IPFAEAVLHA DDHLVVADKP HFLPVAPVGE YVEQTLLARL 130 140 150 160 170 180 VRRLGNPDLV PLHRIDRLTA GLVLFSCNPA SRGRYQALFR ERRIRKVYAA IAPALPGLSF 190 200 210 220 230 240 PLLRRSRLVK GEPFFLMREA EGEPNSETRV EPGERRGELW RYVLHPVTGK THQLRVHMAT 250 260 270 280 290 300 LGAGICNDPL YPRLLERSRR EIDDYRRPLQ LLAQTLNFVD PLSGRERRFD SRLALDFDAC R

References

[1]

"Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes." Setubal J.C., Dos Santos P., Goldman B.S., Ertesvaag H., Espin G., Rubio L.M., Valla S., Almeida N.F., Balasubramanian D., Cromes L., Curatti L., Du Z., Godsy E., Goodner B., Hellner-Burris K., Hernandez J.A., Houmiel K., Imperial J. , Kennedy C., Larson T.J., Latreille P., Ligon L.S., Lu J., Maerk M., Miller N.M., Norton S., O'Carroll I.P., Paulsen I., Raulfs E.C., Roemer R., Rosser J., Segura D., Slater S., Stricklin S.L., Studholme D.J., Sun J., Viana C.J., Wallin E., Wang B., Wheeler C., Zhu H., Dean D.R., Dixon R., Wood D. J. Bacteriol. 191:4534-4545(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DJ / ATCC BAA-1303.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001157 Genomic DNA. Translation: ACO78221.1.
RefSeq	YP_002799196.1. NC_012560.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	322710.Avin_20160.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO78221; ACO78221; Avin_20160.
GeneID	7760944.
KEGG	avn:Avin_20160.
PATRIC	21030283. VBIAzoVin72790_1913.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275916.
KO	K06177.
OMA	FFRMHEV.
Enzyme and pathway databases
BioCyc	AVIN322710:GJ0M-2024-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1DEN6_AZOVD

Accession

Primary (citable) accession number: C1DEN6

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)