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C1DBS0 (C1DBS0_LARHH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.6.1.1 EMBL ACO75473.1
Gene names
Ordered Locus Names:LHK_02491 EMBL ACO75473.1
OrganismLaribacter hongkongensis (strain HLHK9) [Complete proteome] [HAMAP] EMBL ACO75473.1
Taxonomic identifier557598 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaNeisserialesChromobacteriaceaeLaribacter

Protein attributes

Sequence length514 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C1DBS0 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 1D02BCFE46550828

FASTA51457,357
        10         20         30         40         50         60 
MPLTDADLSR LEPETRDRKL FDGRGLYLLV RSNGARYWRL KYRFAGKEKV LALGVWPQVS 

        70         80         90        100        110        120 
LQDARQAADM ARDQLGRGLD PMQARQRPQP APSVSDTPNT TPKAPAMEPI RQSQKLANVC 

       130        140        150        160        170        180 
YDIRGPIMER ARRMEEDGQR IIKLNIGNPA PFGFLAPEEI MQDMIRNLPQ ASGYSDSKGL 

       190        200        210        220        230        240 
FAARKAVMHY SQEKAIPGVT VEDIFIGNGV SELIVMAMNA LLDAGDEVLV PAPDYPLWTA 

       250        260        270        280        290        300 
AVSLSGGTPV HYMCDEQQDW YPDIADIRKK ITPRTRAIVI INPNNPTGAV YPEPVLLEIA 

       310        320        330        340        350        360 
AVAREFGLIV YADEIYDKVL FDGTRHTSIA SLAPDLFCVT FNGLSKNYRA AGYRAGWMIL 

       370        380        390        400        410        420 
SGDKSRASDY IEGLTMLSSM RLCANVPAQY GIQTALGGYQ SINDLVAPTG RLTRQRDLAV 

       430        440        450        460        470        480 
QMLNDMPGVS CVKPKGALYC FPRLDPKLYP VQNDQQFILE LLTEQRVLLV QGTGFNWPGN 

       490        500        510 
DHFRVVFLPH MEDLEEALGR VGRFLEGYRR RFTA 

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References

[1]"The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats."
Woo P.C., Lau S.K., Tse H., Teng J.L., Curreem S.O., Tsang A.K., Fan R.Y., Wong G.K., Huang Y., Loman N.J., Snyder L.A., Cai J.J., Huang J.D., Mak W., Pallen M.J., Lok S., Yuen K.Y.
PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HLHK9 EMBL ACO75473.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001154 Genomic DNA. Translation: ACO75473.1.
RefSeqYP_002796482.1. NC_012559.1.

3D structure databases

ProteinModelPortalC1DBS0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING557598.LHK_02491.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACO75473; ACO75473; LHK_02491.
GeneID7758102.
KEGGlhk:LHK_02491.
PATRIC22301779. VBILarHon49832_2271.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0582.
HOGENOMHOG000223042.
KOK14260.
OMAYQARDMR.
OrthoDBEOG6X9MJ6.

Enzyme and pathway databases

BioCycLHON557598:GHO5-2526-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR025166. DUF4102.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
PF13356. DUF4102. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC1DBS0_LARHH
AccessionPrimary (citable) accession number: C1DBS0
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: July 9, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)