C1DBG9 (C1DBG9_LARHH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Probable pseudouridine synthase EMBL ACO73366.1
EC=5.4.99.12 EMBL ACO73366.1

Gene names

Ordered Locus Names:

LHK_00371

Organism

Laribacter hongkongensis (strain HLHK9) [Complete proteome] [HAMAP] EMBL ACO73366.1

Taxonomic identifier

557598 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Neisseriales › Neisseriaceae › Laribacter › Laribacter hongkongensis

Protein attributes

Sequence length	224 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Isomerase SAAS SAAS000748 EMBL ACO73366.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1DBG9 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 118C58265B58C6D2	FASTA	224	24,887
	10 20 30 40 50 60 MPRLILLNKP FDTICQFSAS PPHATLADWV PVAGVYPAGR LDTDSEGMVL LTDHGPLQHA 70 80 90 100 110 120 IAHPAAKAPK TYWVQVEGTP EAEQLEQLRQ GVDLGDFVTQ PASVRILPEP ELWPRQPPVR 130 140 150 160 170 180 FRKTVPTHWL EIIISEGKNR QVRRMTAKVG LPTLRLVRVA VGSLKLGELQ PGEWREIAKG 190 200 210 220 ELPAVWQQAW SQTAAPKPHR APQSSRAPRF KSTGAGRTAR QRPK

References

[1]

"The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats." Woo P.C.Y., Lau S.K.P., Tse H., Teng J.L.L., Curreem S.O., Tsang A.K.L., Fan R.Y.Y., Wong G.K.M., Huang Y., Loman N.J., Snyder L.A.S., Cai J.J., Huang J.-D., Mak W., Pallen M.J., Lok S., Yuen K.-Y. PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HLHK9.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001154 Genomic DNA. Translation: ACO73366.1.
RefSeq	YP_002794375.1. NC_012559.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	557598.LHK_00371.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO73366; ACO73366; LHK_00371.
GeneID	7755998.
KEGG	lhk:LHK_00371.
PATRIC	22297865. VBILarHon49832_0357.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044955.
KO	K06181.
OMA	TWIELSI.
ProtClustDB	CLSK2485642.
Enzyme and pathway databases
BioCyc	LHON557598:GHO5-370-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C1DBG9_LARHH

Accession

Primary (citable) accession number: C1DBG9

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)