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Protein
Submitted name:

Kgd

Gene

kgd

Organism
Laribacter hongkongensis (strain HLHK9)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. oxoglutarate dehydrogenase (succinyl-transferring) activity Source: UniProtKB-EC
  2. thiamine pyrophosphate binding Source: InterPro

GO - Biological processi

  1. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciLHON557598:GHO5-2451-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
KgdImported (EC:1.2.4.2Imported)
Gene namesi
Name:kgdImported
Ordered Locus Names:LHK_02416Imported
OrganismiLaribacter hongkongensis (strain HLHK9)Imported
Taxonomic identifieri557598 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesChromobacteriaceaeLaribacter
ProteomesiUP000002010: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi557598.LHK_02416.

Structurei

3D structure databases

ProteinModelPortaliC1DB59.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0567.
HOGENOMiHOG000259587.
KOiK00164.
OMAiQNQGAWF.
OrthoDBiEOG6V1M1F.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.

Sequencei

Sequence statusi: Complete.

C1DB59-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MMQAAISHSY LFGGNAPFIE ELYEQYLDDP ATVSAEWREY FDKLQQTGGA
60 70 80 90 100
TRDVPHQPIQ ESFIQLAKTP RVFVNKPSEA TWEAMQKQVA VLKLISAYRV
110 120 130 140 150
LGSRWATLDP LKRMDTQPVP ELDPAYHGLT DTDMAQVFNT GSFVGLASGS
160 170 180 190 200
LSEILGTLKQ TYCGNIGLEY MHIIDSKQKR WVQNYFEGSR STPRYDAAKK
210 220 230 240 250
RSILKQVTAA ETLERYLHTK YVGQKRFSLE GGESMIAALD HLIQNATGFG
260 270 280 290 300
VKELIVGMAH RGRLNVLVNT LGKLPRDLFS EFEGRPAVEL PSGDVKYHMG
310 320 330 340 350
YSSDIPTQNG PMHVSLAFNP SHLEIVNPVV EGSVRARQQR RRDTERREVV
360 370 380 390 400
PVLIHGDAAF GGLGVNQGTF NLSGTRGYGT GGTLHFVVNN QIGFTTSDTR
410 420 430 440 450
DMRSSMYATD IAKMVDAPIF HVNGDDPEAV CFVMQAALEF RMQFKKDVVV
460 470 480 490 500
DMVCFRKLGH NEGDDPMLTQ PMMYKKIVQH PGVRARYVER LVQEGSIDAS
510 520 530 540 550
EADSLISAYR AALDKGEHVE QTVLSNYTRE FKLDWTPYIG THWAHPTDTT
560 570 580 590 600
LPTADLQRLA DKLTTVPEGF KLHPTVSKLL AARREMAAGN QAVDWGMAET
610 620 630 640 650
LAYASLVESG YGVRLSGEDS GRGTFSHRHS VLHDQNRERW DAGAYVPLRN
660 670 680 690 700
LSDNQAEFLV IDSILNEEAV LAYEYGYACS SPKELTIWEA QFGDFANGAQ
710 720 730 740 750
VAIDQFIVSG ETKWGRLCGL TMILPHGYDG QGPEHSSARV ERYLQLCAEH
760 770 780 790 800
NVQVVMPSTA AQMFHVLRRQ MLRPYRKPLI IPMSKRLLRY KESMSPLADF
810 820 830 840 850
TSGGFKPVIG EIEALDAKKV KRVVLCAGQV YYDLLNARRE RDIQDIAIVR
860 870 880 890 900
VEQLYPFPTE QLAAELAQYT NARELMWVQE EPKNQGAWYQ IRHRLERQLA
910 920 930
PKQTLLFAGR PSSASPAVGY MSKHVAQLKA FLEEAMTLG
Length:939
Mass (Da):105,248
Last modified:May 26, 2009 - v1
Checksum:i9E450A1D333BE37B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001154 Genomic DNA. Translation: ACO75398.1.
RefSeqiWP_012697884.1. NC_012559.1.
YP_002796407.1. NC_012559.1.

Genome annotation databases

EnsemblBacteriaiACO75398; ACO75398; LHK_02416.
GeneIDi7758027.
KEGGilhk:LHK_02416.
PATRICi22301659. VBILarHon49832_2211.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001154 Genomic DNA. Translation: ACO75398.1.
RefSeqiWP_012697884.1. NC_012559.1.
YP_002796407.1. NC_012559.1.

3D structure databases

ProteinModelPortaliC1DB59.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi557598.LHK_02416.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACO75398; ACO75398; LHK_02416.
GeneIDi7758027.
KEGGilhk:LHK_02416.
PATRICi22301659. VBILarHon49832_2211.

Phylogenomic databases

eggNOGiCOG0567.
HOGENOMiHOG000259587.
KOiK00164.
OMAiQNQGAWF.
OrthoDBiEOG6V1M1F.

Enzyme and pathway databases

BioCyciLHON557598:GHO5-2451-MONOMER.

Family and domain databases

Gene3Di3.40.50.970. 2 hits.
InterProiIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR029061. THDP-binding.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERiPTHR23152. PTHR23152. 1 hit.
PfamiPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFiPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 2 hits.
TIGRFAMsiTIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats."
    Woo P.C.Y., Lau S.K.P., Tse H., Teng J.L.L., Curreem S.O., Tsang A.K.L., Fan R.Y.Y., Wong G.K.M., Huang Y., Loman N.J., Snyder L.A.S., Cai J.J., Huang J.-D., Mak W., Pallen M.J., Lok S., Yuen K.-Y.
    PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLHK9Imported.

Entry informationi

Entry nameiC1DB59_LARHH
AccessioniPrimary (citable) accession number: C1DB59
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.