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C1D7K7

- C1D7K7_LARHH

UniProt

C1D7K7 - C1D7K7_LARHH

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Protein

RNA polymerase sigma factor

Gene
rpoE, LHK_01458
Organism
Laribacter hongkongensis (strain HLHK9)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciLHON557598:GHO5-1488-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoEImported
Ordered Locus Names:LHK_01458Imported
OrganismiLaribacter hongkongensis (strain HLHK9)Imported
Taxonomic identifieri557598 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesChromobacteriaceaeLaribacter
ProteomesiUP000002010: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi557598.LHK_01458.

Structurei

3D structure databases

ProteinModelPortaliC1D7K7.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiYVNIHTY.
OrthoDBiEOG6ZD6DW.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C1D7K7-1 [UniParc]FASTAAdd to Basket

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MNDREVDLLL VERARAGDAR AFDLLVIKYR RKLARLLARI VRDPGMAEDV    50
LQETFIKAFR ALPQFRGDSA FYTWLYRIGI NTARNQLGEE RHRPLLMTEL 100
ETGDEENGRN VQERPDDDTP ETELLSREII EAVNRAMDAL QDDLRQAIAL 150
RELEGLSYEE IARRMNCPIG TVRSRIFRAR EAIAAELRPL LDTPENKRW 199
Length:199
Mass (Da):23,134
Last modified:May 26, 2009 - v1
Checksum:iB5ABDCF8A657D0F1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001154 Genomic DNA. Translation: ACO74447.1.
RefSeqiYP_002795456.1. NC_012559.1.

Genome annotation databases

EnsemblBacteriaiACO74447; ACO74447; LHK_01458.
GeneIDi7757076.
KEGGilhk:LHK_01458.
PATRICi22299903. VBILarHon49832_1346.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001154 Genomic DNA. Translation: ACO74447.1 .
RefSeqi YP_002795456.1. NC_012559.1.

3D structure databases

ProteinModelPortali C1D7K7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 557598.LHK_01458.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACO74447 ; ACO74447 ; LHK_01458 .
GeneIDi 7757076.
KEGGi lhk:LHK_01458.
PATRICi 22299903. VBILarHon49832_1346.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000094755.
KOi K03088.
OMAi YVNIHTY.
OrthoDBi EOG6ZD6DW.

Enzyme and pathway databases

BioCyci LHON557598:GHO5-1488-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEi PS01063. SIGMA70_ECF. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats."
    Woo P.C., Lau S.K., Tse H., Teng J.L., Curreem S.O., Tsang A.K., Fan R.Y., Wong G.K., Huang Y., Loman N.J., Snyder L.A., Cai J.J., Huang J.D., Mak W., Pallen M.J., Lok S., Yuen K.Y.
    PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLHK9Imported.

Entry informationi

Entry nameiC1D7K7_LARHH
AccessioniPrimary (citable) accession number: C1D7K7
Entry historyi
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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