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C1D7K7

- C1D7K7_LARHH

UniProt

C1D7K7 - C1D7K7_LARHH

Protein

RNA polymerase sigma factor

Gene

rpoE

Organism
Laribacter hongkongensis (strain HLHK9)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (26 May 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciLHON557598:GHO5-1488-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma factorUniRule annotation
    Gene namesi
    Name:rpoEImported
    Ordered Locus Names:LHK_01458Imported
    OrganismiLaribacter hongkongensis (strain HLHK9)Imported
    Taxonomic identifieri557598 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesChromobacteriaceaeLaribacter
    ProteomesiUP000002010: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi557598.LHK_01458.

    Structurei

    3D structure databases

    ProteinModelPortaliC1D7K7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the sigma-70 factor family. ECF subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1595.
    HOGENOMiHOG000094755.
    KOiK03088.
    OMAiYVNIHTY.
    OrthoDBiEOG6ZD6DW.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR014286. RNA_pol_sigma70_RpoE.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02939. RpoE_Sigma70. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEiPS01063. SIGMA70_ECF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C1D7K7-1 [UniParc]FASTAAdd to Basket

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    MNDREVDLLL VERARAGDAR AFDLLVIKYR RKLARLLARI VRDPGMAEDV    50
    LQETFIKAFR ALPQFRGDSA FYTWLYRIGI NTARNQLGEE RHRPLLMTEL 100
    ETGDEENGRN VQERPDDDTP ETELLSREII EAVNRAMDAL QDDLRQAIAL 150
    RELEGLSYEE IARRMNCPIG TVRSRIFRAR EAIAAELRPL LDTPENKRW 199
    Length:199
    Mass (Da):23,134
    Last modified:May 26, 2009 - v1
    Checksum:iB5ABDCF8A657D0F1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001154 Genomic DNA. Translation: ACO74447.1.
    RefSeqiYP_002795456.1. NC_012559.1.

    Genome annotation databases

    EnsemblBacteriaiACO74447; ACO74447; LHK_01458.
    GeneIDi7757076.
    KEGGilhk:LHK_01458.
    PATRICi22299903. VBILarHon49832_1346.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001154 Genomic DNA. Translation: ACO74447.1 .
    RefSeqi YP_002795456.1. NC_012559.1.

    3D structure databases

    ProteinModelPortali C1D7K7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 557598.LHK_01458.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACO74447 ; ACO74447 ; LHK_01458 .
    GeneIDi 7757076.
    KEGGi lhk:LHK_01458.
    PATRICi 22299903. VBILarHon49832_1346.

    Phylogenomic databases

    eggNOGi COG1595.
    HOGENOMi HOG000094755.
    KOi K03088.
    OMAi YVNIHTY.
    OrthoDBi EOG6ZD6DW.

    Enzyme and pathway databases

    BioCyci LHON557598:GHO5-1488-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR000838. RNA_pol_sigma70_ECF_CS.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR014286. RNA_pol_sigma70_RpoE.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02939. RpoE_Sigma70. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEi PS01063. SIGMA70_ECF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats."
      Woo P.C.Y., Lau S.K.P., Tse H., Teng J.L.L., Curreem S.O., Tsang A.K.L., Fan R.Y.Y., Wong G.K.M., Huang Y., Loman N.J., Snyder L.A.S., Cai J.J., Huang J.-D., Mak W., Pallen M.J., Lok S., Yuen K.-Y.
      PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HLHK9Imported.

    Entry informationi

    Entry nameiC1D7K7_LARHH
    AccessioniPrimary (citable) accession number: C1D7K7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 26, 2009
    Last sequence update: May 26, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3