C1D7K7 (C1D7K7_LARHH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000716

Gene names

Name:	rpoE EMBL ACO74447.1
Ordered Locus Names:	LHK_01458

Organism

Laribacter hongkongensis (strain HLHK9) [Complete proteome] [HAMAP] EMBL ACO74447.1

Taxonomic identifier

557598 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Neisseriales › Neisseriaceae › Laribacter › Laribacter hongkongensis

Protein attributes

Sequence length	199 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000716 SAAS SAAS007627
Molecular function	Sigma factor RuleBase RU000716 SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1D7K7 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: B5ABDCF8A657D0F1	FASTA	199	23,134
	10 20 30 40 50 60 MNDREVDLLL VERARAGDAR AFDLLVIKYR RKLARLLARI VRDPGMAEDV LQETFIKAFR 70 80 90 100 110 120 ALPQFRGDSA FYTWLYRIGI NTARNQLGEE RHRPLLMTEL ETGDEENGRN VQERPDDDTP 130 140 150 160 170 180 ETELLSREII EAVNRAMDAL QDDLRQAIAL RELEGLSYEE IARRMNCPIG TVRSRIFRAR 190 EAIAAELRPL LDTPENKRW

References

[1]

"The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats." Woo P.C.Y., Lau S.K.P., Tse H., Teng J.L.L., Curreem S.O., Tsang A.K.L., Fan R.Y.Y., Wong G.K.M., Huang Y., Loman N.J., Snyder L.A.S., Cai J.J., Huang J.-D., Mak W., Pallen M.J., Lok S., Yuen K.-Y. PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HLHK9.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001154 Genomic DNA. Translation: ACO74447.1.
RefSeq	YP_002795456.1. NC_012559.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	557598.LHK_01458.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO74447; ACO74447; LHK_01458.
GeneID	7757076.
KEGG	lhk:LHK_01458.
PATRIC	22299903. VBILarHon49832_1346.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1595.
HOGENOM	HOG000094755.
KO	K03088.
OMA	IAVAMEC.
Enzyme and pathway databases
BioCyc	LHON557598:GHO5-1448-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000838. RNA_pol_sigma70_ECF_CS. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR014286. RNA_pol_sigma70_RpoE. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02939. RpoE_Sigma70. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS01063. SIGMA70_ECF. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1D7K7_LARHH

Accession

Primary (citable) accession number: C1D7K7

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)