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C1D7K7 (C1D7K7_LARHH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000716
Gene names
Name:rpoE EMBL ACO74447.1
Ordered Locus Names:LHK_01458 EMBL ACO74447.1
OrganismLaribacter hongkongensis (strain HLHK9) [Complete proteome] [HAMAP] EMBL ACO74447.1
Taxonomic identifier557598 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaNeisserialesNeisseriaceaeLaribacter

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sigma-70 factor family. ECF subfamily. RuleBase RU000716

Sequences

Sequence LengthMass (Da)Tools
C1D7K7 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: B5ABDCF8A657D0F1

FASTA19923,134
        10         20         30         40         50         60 
MNDREVDLLL VERARAGDAR AFDLLVIKYR RKLARLLARI VRDPGMAEDV LQETFIKAFR 

        70         80         90        100        110        120 
ALPQFRGDSA FYTWLYRIGI NTARNQLGEE RHRPLLMTEL ETGDEENGRN VQERPDDDTP 

       130        140        150        160        170        180 
ETELLSREII EAVNRAMDAL QDDLRQAIAL RELEGLSYEE IARRMNCPIG TVRSRIFRAR 

       190 
EAIAAELRPL LDTPENKRW 

« Hide

References

[1]"The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats."
Woo P.C., Lau S.K., Tse H., Teng J.L., Curreem S.O., Tsang A.K., Fan R.Y., Wong G.K., Huang Y., Loman N.J., Snyder L.A., Cai J.J., Huang J.D., Mak W., Pallen M.J., Lok S., Yuen K.Y.
PLoS Genet. 5:E1000416-E1000416(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HLHK9 EMBL ACO74447.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001154 Genomic DNA. Translation: ACO74447.1.
RefSeqYP_002795456.1. NC_012559.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING557598.LHK_01458.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACO74447; ACO74447; LHK_01458.
GeneID7757076.
KEGGlhk:LHK_01458.
PATRIC22299903. VBILarHon49832_1346.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1595.
HOGENOMHOG000094755.
KOK03088.
OMARILINNC.
OrthoDBEOG6ZD6DW.

Enzyme and pathway databases

BioCycLHON557598:GHO5-1488-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000838. RNA_pol_sigma70_ECF_CS.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR014286. RNA_pol_sigma70_RpoE.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02939. RpoE_Sigma70. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS01063. SIGMA70_ECF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1D7K7_LARHH
AccessionPrimary (citable) accession number: C1D7K7
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: April 16, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)