C1D0S0 (C1D0S0_DEIDV) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase subunit beta HAMAP MF_01321
Short name=RNAP subunit beta HAMAP MF_01321
EC=2.7.7.6 HAMAP MF_01321

Alternative name(s):
RNA polymerase subunit beta HAMAP MF_01321
Transcriptase subunit beta HAMAP MF_01321

Gene names

Name:	rpoB HAMAP MF_01321 EMBL ACO45444.1
Ordered Locus Names:	Deide_06030

Organism

Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) [Complete proteome] [HAMAP]

Taxonomic identifier

546414 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus

Protein attributes

Sequence length	1151 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP MF_01321 RuleBase RU000432
Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP MF_01321
Subunit structure	The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity. HAMAP MF_01321 RuleBase RU000433
Sequence similarities	Belongs to the RNA polymerase beta chain family. HAMAP MF_01321 RuleBase RU000434

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase HAMAP MF_01321 EMBL ACO45444.1
Molecular function	Nucleotidyltransferase HAMAP MF_01321 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: HAMAP DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: HAMAP ribonucleoside binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1D0S0 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 0853056922AC9D4F	FASTA	1,151	127,488
	10 20 30 40 50 60 MSFNGIEPRI ERFGDIKEVI PLPNLTEVQV NSFRAFLQAD RAPDRREDAG LQSAFKEVFP 70 80 90 100 110 120 IDETEKGRST GLVLDYLEYR LGDPPYSPEE CREKDLTYQA PMYAKLQLIH KDSGLIKEDQ 130 140 150 160 170 180 VFLGDLPLMT EDGSFVINGA DRVVISQIHR SPGVYFTSSY KGIKKMYTGA IIPMPKRGPW 190 200 210 220 230 240 IELEFAGGVL EMKVNKRKFP VALLLRVLGY DDAQLRALFT EFEPDVELPE DKSAGMGADE 250 260 270 280 290 300 ALLRLFTVLR PGDPPKRDKA TQYLYGLLAD PRRYDLGEPG RFKMNTKLGV NRPERTLLKF 310 320 330 340 350 360 EDGKFSDAGL VDTIRYLMAL QQGLETVKMV DEDGVVTDVP VGEDDIDHLG NRRVRTVGEL 370 380 390 400 410 420 LADQLRVGMG RMARGVRERM LLGNPDAATP TKLVNNRPIV AAMREFFGRS QLSQFKDQTN 430 440 450 460 470 480 PLSDLRHKRR ISALGPGGLT RERAGFDVRD VHRTHYGRIC PIETPEGANI GLISSLSSYS 490 500 510 520 530 540 KVNDLGFIEA PYRRVENGRV TDDVVYMTAD IEDRYTIAQA NSPLNDDNTF ADERVLARRK 550 560 570 580 590 600 GDPLWYTPEE VDFMDVSPKQ IVSINTSLIP FLEHDDANRA LMGSNMQSQA VPLVRADSPA 610 620 630 640 650 660 VGTGVERRVV TDSGTSVVSD VTGRVTYVDA RAIQITLSED SAEAGMVKGN VRTFELVRFT 670 680 690 700 710 720 RSNQGTNLDQ APIVNVGDEV VAGQVIADGP ASDLGRLALG QNITIAIMPF DGFNFEDAIC 730 740 750 760 770 780 ISEGLVQKDF YTSVHIEKDE IDARDTKLGP EKITRDIPGL SEAALRDLDE DGIVRVGAEV 790 800 810 820 830 840 KPGDILVGKT SFKGESEPTP EERLLRSIFG EKAREVKDTS LRVMSGQGGI VVKTVRFRRG 850 860 870 880 890 900 DEGVDLKPGV REMVRVYVAQ KRQLQVGDKV ANRHGNKGVV SKIMRPEDMP YLEDGTPVDL 910 920 930 940 950 960 VFNPLGVPSR MNLGQILETH LGEVARLTGQ KFETPVFDSV TEATIKEMLE VAAAERLQAR 970 980 990 1000 1010 1020 KDEGFELDKR EQEVLDRAGK LGVIDAPGSD YERAQMQLAR TGKSILYDGR SGEPISGPVV 1030 1040 1050 1060 1070 1080 VGTMYVMKLY HMVEDKLHAR STGPYSLITQ QPLGGKAQNG GQRFGEMEVW ALEAYGAAHT 1090 1100 1110 1120 1130 1140 LQEMLTIKSD DIDGRDAAYQ SIVKGEEVSG STIPESFKVL LKELHSLGLD VEVLDAGDRP 1150 VDIFEGMMPK R

References

[1]

"Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti." de Groot A., Dulermo R., Ortet P., Blanchard L., Guerin P., Fernandez B., Vacherie B., Dossat C., Jolivet E., Siguier P., Chandler M., Barakat M., Dedieu A., Barbe V., Heulin T., Sommer S., Achouak W., Armengaud J. PLoS Genet. 5:E1000434-E1000434(2009) [PubMed: 19370165] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: VCD115 / DSM 17065 / LMG 22923.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001114 Genomic DNA. Translation: ACO45444.1.
RefSeq	YP_002785198.1. NC_012526.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C1D0S0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7738058.
GenomeReviews	Gene locus Deide_06030 in contig CP001114_GR.
KEGG	ddr:Deide_06030.
PATRIC	21614776. VBIDeiDes121019_0680.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	HANEEIT.
ProtClustDB	PRK00405.
Family and domain databases
HAMAP	MF_01321. RNApol_bact_RpoB. [Tree]
InterPro	IPR010243. DNA-dir_RNA_pol_bsu_bac-type. IPR019462. DNA-dir_RNA_pol_bsu_external_1. IPR015712. DNA-dir_RNA_pol_su2. IPR007120. DNA-dir_RNA_pol_su2_6. IPR007121. RNA_pol_bsu_CS. IPR007644. RNA_pol_bsu_protrusion. IPR007642. RNA_pol_Rpb2_2. IPR007645. RNA_pol_Rpb2_3. IPR007641. RNA_pol_Rpb2_7. IPR014724. RNA_pol_RPB2_OB-fold. [Graphical view]
Gene3D	G3DSA:2.30.150.10. G3DSA:2.30.150.10. 1 hit. G3DSA:2.40.270.10. G3DSA:2.40.270.10. 2 hits. G3DSA:2.40.50.150. Ribosomal_L2. 1 hit.
KO	K03043.
PANTHER	PTHR20856:SF3. PTHR20856:SF3. 1 hit. PTHR20856. RNA_pol_I_sub2. 1 hit.
Pfam	PF04563. RNA_pol_Rpb2_1. 1 hit. PF04561. RNA_pol_Rpb2_2. 1 hit. PF04565. RNA_pol_Rpb2_3. 1 hit. PF10385. RNA_pol_Rpb2_45. 1 hit. PF00562. RNA_pol_Rpb2_6. 1 hit. PF04560. RNA_pol_Rpb2_7. 1 hit. [Graphical view]
TIGRFAMs	TIGR02013. RpoB. 1 hit.
PROSITE	PS01166. RNA_POL_BETA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1D0S0_DEIDV

Accession

Primary (citable) accession number: C1D0S0

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)