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C1CZJ0 (C1CZJ0_DEIDV) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:rph EMBL ACO47238.1
Ordered Locus Names:Deide_22100 EMBL ACO47238.1
OrganismDeinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) [Complete proteome] [HAMAP] EMBL ACO47238.1
Taxonomic identifier546414 [NCBI]
Taxonomic lineageBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus

Protein attributes

Sequence length249 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. SAAS SAAS002381

Sequences

Sequence LengthMass (Da)Tools
C1CZJ0 [UniParc].

Last modified May 26, 2009. Version 1.
Checksum: 973B2E5D06DF694E

FASTA24927,199
        10         20         30         40         50         60 
MTSVQPNKFP PREGRGLLEP RPVSVKRGVN PHAPGSAHLI MGRTEILATV TLEDKPAPHM 

        70         80         90        100        110        120 
RGKKEGWLTA EYSMLPRATN DRQARERNLQ NGRRHEIQRL LGRALRASVD LKYFRNQTIY 

       130        140        150        160        170        180 
VDCDVLVADG GTRVASILAG HAALHDFCDR LINSGQLSEW PLTHKVGAIS VGLVGEEVRV 

       190        200        210        220        230        240 
DLDYAEDKVA RADLNVVATD TGLVIEVQGG AEEGPISLAE YSQLLHTGVQ AIHGVMDELG 


RELAVIQGV 

« Hide

References

[1]"Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti."
de Groot A., Dulermo R., Ortet P., Blanchard L., Guerin P., Fernandez B., Vacherie B., Dossat C., Jolivet E., Siguier P., Chandler M., Barakat M., Dedieu A., Barbe V., Heulin T., Sommer S., Achouak W., Armengaud J.
PLoS Genet. 5:E1000434-E1000434(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: VCD115 / DSM 17065 / LMG 22923.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001114 Genomic DNA. Translation: ACO47238.1.
RefSeqYP_002786992.1. NC_012526.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING546414.Deide_22100.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACO47238; ACO47238; Deide_22100.
GeneID7739753.
KEGGddr:Deide_22100.
PATRIC21618532. VBIDeiDes121019_2535.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAYTEDSAA.
OrthoDBEOG6CZQQP.

Enzyme and pathway databases

BioCycDDES546414:GHOM-2503-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC1CZJ0_DEIDV
AccessionPrimary (citable) accession number: C1CZJ0
Entry history
Integrated into UniProtKB/TrEMBL: May 26, 2009
Last sequence update: May 26, 2009
Last modified: May 14, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)