C1CZJ0 (C1CZJ0_DEIDV) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease) (Ribonuclease PH) (RNase PH) EMBL ACO47238.1

Gene names

Name:	rph EMBL ACO47238.1
Ordered Locus Names:	Deide_22100 EMBL ACO47238.1

Organism

Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) [Complete proteome] [HAMAP] EMBL ACO47238.1

Taxonomic identifier

546414 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus › Deinococcus deserti

Protein attributes

Sequence length	249 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. SAAS SAAS002381
Catalytic activity	tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. SAAS SAAS002381

Ontologies

Keywords
Biological process	tRNA processing SAAS SAAS002381
Molecular function	Exonuclease EMBL ACO47238.1 Hydrolase Nuclease Nucleotidyltransferase SAAS SAAS002381 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tRNA processing Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	exonuclease activity Inferred from electronic annotation. Source: UniProtKB-KW nucleotidyltransferase activity Inferred from electronic annotation. Source: UniProtKB-KW tRNA binding Inferred from electronic annotation. Source: InterPro tRNA-specific ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1CZJ0 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 973B2E5D06DF694E	FASTA	249	27,199
	10 20 30 40 50 60 MTSVQPNKFP PREGRGLLEP RPVSVKRGVN PHAPGSAHLI MGRTEILATV TLEDKPAPHM 70 80 90 100 110 120 RGKKEGWLTA EYSMLPRATN DRQARERNLQ NGRRHEIQRL LGRALRASVD LKYFRNQTIY 130 140 150 160 170 180 VDCDVLVADG GTRVASILAG HAALHDFCDR LINSGQLSEW PLTHKVGAIS VGLVGEEVRV 190 200 210 220 230 240 DLDYAEDKVA RADLNVVATD TGLVIEVQGG AEEGPISLAE YSQLLHTGVQ AIHGVMDELG RELAVIQGV

References

[1]

"Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti." de Groot A., Dulermo R., Ortet P., Blanchard L., Guerin P., Fernandez B., Vacherie B., Dossat C., Jolivet E., Siguier P., Chandler M., Barakat M., Dedieu A., Barbe V., Heulin T., Sommer S., Achouak W., Armengaud J. PLoS Genet. 5:E1000434-E1000434(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: VCD115 / DSM 17065 / LMG 22923.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001114 Genomic DNA. Translation: ACO47238.1.
RefSeq	YP_002786992.1. NC_012526.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	546414.Deide_22100.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACO47238; ACO47238; Deide_22100.
GeneID	7739753.
KEGG	ddr:Deide_22100.
PATRIC	21618532. VBIDeiDes121019_2535.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HOG000229516.
KO	K00989.
OMA	MLPRATG.
ProtClustDB	CLSK445146.
Enzyme and pathway databases
BioCyc	DDES546414:GHOM-3364-MONOMER.
Family and domain databases
InterPro	IPR001247. ExoRNase_PH_dom1. IPR015847. ExoRNase_PH_dom2. IPR020568. Ribosomal_S5_D2-typ_fold. IPR002381. RNase_PH_bac-type. IPR018336. RNase_PH_CS. [Graphical view]
Pfam	PF01138. RNase_PH. 1 hit. PF03725. RNase_PH_C. 1 hit. [Graphical view]
SUPFAM	SSF55666. 3_ExoRNase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01966. RNasePH. 1 hit.
PROSITE	PS01277. RIBONUCLEASE_PH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1CZJ0_DEIDV

Accession

Primary (citable) accession number: C1CZJ0

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)