C1BQM2 (C1BQM2_9MAXI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcription elongation factor S-II EMBL ACO11325.1

Gene names

Name:

TFS2 EMBL ACO11325.1

Organism

Caligus rogercresseyi EMBL ACO11325.1

Taxonomic identifier

217165 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Panarthropoda › Arthropoda › Mandibulata › Pancrustacea › Crustacea › Maxillopoda › Copepoda › Neocopepoda › Podoplea › Siphonostomatoida › Caligidae › Caligus

Protein attributes

Sequence length	299 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Protein biosynthesis
Molecular function	Elongation factor EMBL ACO11325.1
Gene Ontology (GO)
Biological_process	regulation of DNA-dependent transcription, elongation Inferred from electronic annotation. Source: InterPro regulation of transcription from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular_component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C1BQM2 [UniParc]. Last modified May 26, 2009. Version 1. Checksum: 79AEB856364DB950	FASTA	299	33,048
	10 20 30 40 50 60 MGVEEEVVDI RKKLENILGD SDDGNQALDL LKVLGRLKIN LDILTVTRIG MTVNNLRKKS 70 80 90 100 110 120 KDEEVVTVAK SLIKTWKKFV PENSEKSKKK EPEEESVKKC SSGKEDNAKG GSSGNGPAPK 130 140 150 160 170 180 GFVPKSTNIG TTDDVRLRCR EMISNALKGT TDAGLPDGTV KPPEEFGDLI EEAIFSNFKS 190 200 210 220 230 240 TSAKYKNQIR SRVFNLRDKK NPALRENVLT GIIDPPKFAV MTADEMASDE IKNQRAAFVK 250 260 270 280 290 QGIDASQLAH IQGTKTDLLK CGKCKQSNCT YNQIQTRSAD EPMATFVLCN ECGNRWKFC

References

[1]	"Caligus rogercresseyi ESTs and full-length cDNAs." Yasuike M., von Schalburg K., Cooper G., Leong J., Jones S.R.M., Koop B.F. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Whole tissue EMBL ACO11325.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BT076901 mRNA. Translation: ACO11325.1.
3D structure databases
ProteinModelPortal	C1BQM2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
Gene3D	1.10.472.30. 1 hit. 1.20.930.10. 1 hit.
InterPro	IPR016492. TF_IIS-rel. IPR003618. TFIIS_cen_dom. IPR017923. TFIIS_N. IPR006289. TFSII. IPR001222. Znf_TFIIS. [Graphical view]
Pfam	PF08711. Med26. 1 hit. PF01096. TFIIS_C. 1 hit. PF07500. TFIIS_M. 1 hit. [Graphical view]
PIRSF	PIRSF006704. TF_IIS. 1 hit.
SMART	SM00440. ZnF_C2C2. 1 hit. [Graphical view]
SUPFAM	SSF46942. TFIIS_centre. 1 hit. SSF47676. TFIIS_conserved. 1 hit.
TIGRFAMs	TIGR01385. TFSII. 1 hit.
PROSITE	PS51321. TFIIS_CENTRAL. 1 hit. PS51319. TFIIS_N. 1 hit. PS00466. ZF_TFIIS_1. 1 hit. PS51133. ZF_TFIIS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C1BQM2_9MAXI

Accession

Primary (citable) accession number: C1BQM2

Entry history

Integrated into UniProtKB/TrEMBL:	May 26, 2009
Last sequence update:	May 26, 2009
Last modified:	March 6, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)